ATAC-seq_ENCSR846VLJ
ATAC-seq ENCSR846VLJ [biosample_summary="Homo sapiens sigmoid colon tissue female adult (53 years)"]
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| Id: | ATAC-seq/ENCSR846VLJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR846VLJ [biosample_summary="Homo sapiens sigmoid colon tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN023LDZ|/analyses/ENCAN023LDZ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN023LDZ|/analyses/ENCAN023LDZ/} has in progress subobject document {fbc1657e-30d2-48c1-aa7e-cb4f3e521531|/documents/fbc1657e-30d2-48c1-aa7e-cb4f3e521531/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF656BHJ|/files/ENCFF656BHJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.832682. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF656BHJ|/files/ENCFF656BHJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.85. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR846VLJ | float |
ATAC-seq_ENCSR846VLJ |
ATAC-seq ENCSR846VLJ [biosample_summary="Homo sapiens sigmoid colon tissue female adult (53 years)"]
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[1.36, 40.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF452WBJ.bed.gz | 3.94 MB | fd1d1d63c547809f46652c1f23c8b062 |
| ENCFF452WBJ.bed.gz.dvc | 101.0 B | 5a5c6e654e14a42cb52ce623e68426d2 |
| ENCFF452WBJ.tabix.bed.gz | 1.06 MB | 7d7cf2ec86888d9d180491f1ce45f604 |
| ENCFF452WBJ.tabix.bed.gz.dvc | 107.0 B | 4275da83d5814429c1e5b928f75dfb3a |
| ENCFF452WBJ.tabix.bed.gz.tbi | 400.33 KB | 7e14fabf5ec023bea22d6f5c672dba77 |
| ENCFF452WBJ.tabix.bed.gz.tbi.dvc | 110.0 B | a547d64f5d6c77f588cf19885e1ef22b |
| genomic_resource.yaml | 2.79 KB | e1ecf910f1cd828b73d99332de994094 |
| genomic_resource_original.yaml | 2.69 KB | 9c93784de61c187c87cc80ae27fd292f |
| statistics/ |