Resource
| Id | ATAC-seq/ENCSR841LHT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary |
ATAC-seq ENCSR841LHT [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (20 years)"]
|
| Description |
status: released biological_replicates: Rep 1 summary: male adult (20 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN209FMQ|/analyses/ENCAN209FMQ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF489WFA|/files/ENCFF489WFA/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.697397. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF489WFA|/files/ENCFF489WFA/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.72. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR841LHT | float |
ATAC-seq_ENCSR841LHT |
ATAC-seq ENCSR841LHT [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (20 years)"]
|
 |
[1.42, 47.8] |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF246KRE.bed.gz | 2.56 MB | b15ad8269e7fbd85c5cb26a2cf4fcd4d |
| ENCFF246KRE.bed.gz.dvc | 101.0 B | b9d05083e3f05d673a3f8863781e8062 |
| ENCFF246KRE.tabix.bed.gz | 706.29 KB | 6fe200ca86337c4ff2dd9aa629f2b9e0 |
| ENCFF246KRE.tabix.bed.gz.dvc | 106.0 B | 1eb7b18f867e2c549ac9b4053d071c61 |
| ENCFF246KRE.tabix.bed.gz.tbi | 281.46 KB | 2e056e581563e52f8b40df014ac381ae |
| ENCFF246KRE.tabix.bed.gz.tbi.dvc | 110.0 B | 5ee2c745a10df7ba4a390673a89a7253 |
| genomic_resource.yaml | 2.81 KB | 88fc131898176df67d11c76724e12e48 |
| statistics/ |