ATAC-seq_ENCSR839UOB
ATAC-seq ENCSR839UOB [biosample_summary="Homo sapiens HG03432"]
×
| Id: | ATAC-seq/ENCSR839UOB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR839UOB [biosample_summary="Homo sapiens HG03432"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN282PDK|/analyses/ENCAN282PDK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF170VVQ|/files/ENCFF170VVQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.884079. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF170VVQ|/files/ENCFF170VVQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR839UOB | float |
ATAC-seq_ENCSR839UOB |
ATAC-seq ENCSR839UOB [biosample_summary="Homo sapiens HG03432"]
|
|
[1.37, 46.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF831FGS.bed.gz | 5.27 MB | 6a87c7891d971da468a58910bfa24def |
| ENCFF831FGS.bed.gz.dvc | 101.0 B | bb4d9e93b85f5e38b309b5337344e841 |
| ENCFF831FGS.tabix.bed.gz | 1.49 MB | 18b8a7e259fbc87bcc650013e6c6aeb1 |
| ENCFF831FGS.tabix.bed.gz.dvc | 107.0 B | c3b7d42f2e8ee58e5194895e1322acbf |
| ENCFF831FGS.tabix.bed.gz.tbi | 539.95 KB | ab5dd2fd52c3c759ab5f6d63a7b3c655 |
| ENCFF831FGS.tabix.bed.gz.tbi.dvc | 110.0 B | 2d7d55ffc5259c418b2a55f7228a5157 |
| genomic_resource.yaml | 2.49 KB | ddc359505a3f74c1a35c937133749577 |
| genomic_resource_original.yaml | 2.42 KB | f37270f2ac54a6e4cc0e72e8a63cae8c |
| statistics/ |