ATAC-seq_ENCSR839IAD
ATAC-seq ENCSR839IAD [biosample_summary="Homo sapiens GM19397"]
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| Id: | ATAC-seq/ENCSR839IAD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR839IAD [biosample_summary="Homo sapiens GM19397"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN637OGA|/analyses/ENCAN637OGA/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN637OGA|/analyses/ENCAN637OGA/} has in progress subobject document {9b0c93b3-95fa-4a80-a4ad-31b77772f33a|/documents/9b0c93b3-95fa-4a80-a4ad-31b77772f33a/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF593SBD|/files/ENCFF593SBD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.843603. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF593SBD|/files/ENCFF593SBD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR839IAD | float |
ATAC-seq_ENCSR839IAD |
ATAC-seq ENCSR839IAD [biosample_summary="Homo sapiens GM19397"]
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[1.4, 40.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF259FJX.bed.gz | 3.47 MB | 26e5e6c5ede3c5583b8d71d78f790746 |
| ENCFF259FJX.bed.gz.dvc | 101.0 B | ffe55131545c254f5105a9a702373f51 |
| ENCFF259FJX.tabix.bed.gz | 971.12 KB | 7a4751ec026fb9cb1e8f3a8d0161aefb |
| ENCFF259FJX.tabix.bed.gz.dvc | 106.0 B | 9791686914bf34df130cef16cf087c52 |
| ENCFF259FJX.tabix.bed.gz.tbi | 405.99 KB | 1074b9bf9e26df2826547d92574eac14 |
| ENCFF259FJX.tabix.bed.gz.tbi.dvc | 110.0 B | 53eac867cba33f5e8c649de666193f66 |
| genomic_resource.yaml | 2.71 KB | 93ecf0bcaf366adf5dd96983e275f7ba |
| genomic_resource_original.yaml | 2.64 KB | 0a45bc2dcbee70544bf18ab0b168414c |
| statistics/ |