ATAC-seq_ENCSR835WBW
ATAC-seq ENCSR835WBW [biosample_summary="Homo sapiens HG03565"]
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| Id: | ATAC-seq/ENCSR835WBW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR835WBW [biosample_summary="Homo sapiens HG03565"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN715JBI|/analyses/ENCAN715JBI/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF220BRO|/files/ENCFF220BRO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.832409. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF220BRO|/files/ENCFF220BRO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR835WBW | float |
ATAC-seq_ENCSR835WBW |
ATAC-seq ENCSR835WBW [biosample_summary="Homo sapiens HG03565"]
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[1.64, 46.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF557QED.bed.gz | 3.66 MB | dd53f18a88f283987cd5febc8d50b4aa |
| ENCFF557QED.bed.gz.dvc | 101.0 B | 65f0eb1f054e8ec6af4563e78ec23f9f |
| ENCFF557QED.tabix.bed.gz | 1.18 MB | 946ad87a22103c0658044e85441fea08 |
| ENCFF557QED.tabix.bed.gz.dvc | 107.0 B | e2051340f7ef5e1691cbf4f2c5134276 |
| ENCFF557QED.tabix.bed.gz.tbi | 479.63 KB | a587f8d2f5f928be00e63508b48dc939 |
| ENCFF557QED.tabix.bed.gz.tbi.dvc | 110.0 B | fd5992207b51c9d909cefd8287c03fc2 |
| genomic_resource.yaml | 2.49 KB | a8d48e968163b67300a1d0a46739128b |
| genomic_resource_original.yaml | 2.42 KB | 166c54cdd28892d7f3d7bc954ed0dd3a |
| statistics/ |