ATAC-seq_ENCSR824DUE
ATAC-seq ENCSR824DUE [biosample_summary="Homo sapiens HG03378"]
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| Id: | ATAC-seq/ENCSR824DUE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR824DUE [biosample_summary="Homo sapiens HG03378"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN241WXK|/analyses/ENCAN241WXK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF497QOS|/files/ENCFF497QOS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.835749. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF497QOS|/files/ENCFF497QOS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR824DUE | float |
ATAC-seq_ENCSR824DUE |
ATAC-seq ENCSR824DUE [biosample_summary="Homo sapiens HG03378"]
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[1.37, 29.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF781JGR.bed.gz | 3.94 MB | ae055b793dd75a83454b268879c2deaa |
| ENCFF781JGR.bed.gz.dvc | 101.0 B | 774fa1d40edd417395cb172513131dc0 |
| ENCFF781JGR.tabix.bed.gz | 1.15 MB | e4327c29f29a4c2339e6acb12250c9f1 |
| ENCFF781JGR.tabix.bed.gz.dvc | 107.0 B | e46a79dfe03d6d682acf3bb0d4ff7937 |
| ENCFF781JGR.tabix.bed.gz.tbi | 453.7 KB | 1cd0e672e2c2b4b532419446210a7759 |
| ENCFF781JGR.tabix.bed.gz.tbi.dvc | 110.0 B | b33919ccbbf98f6933d75733582fda1b |
| genomic_resource.yaml | 2.49 KB | 5ca84a5021a3c853cc63464eaed6a6bf |
| genomic_resource_original.yaml | 2.42 KB | 8b71594daa262fe70e493d582f48cf1f |
| statistics/ |