Resource
| Id | ATAC-seq/ENCSR824DUE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR824DUE [biosample_summary="Homo sapiens HG03378"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN241WXK|/analyses/ENCAN241WXK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF497QOS|/files/ENCFF497QOS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.835749. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF497QOS|/files/ENCFF497QOS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR824DUE | float |
ATAC-seq_ENCSR824DUE |
ATAC-seq ENCSR824DUE [biosample_summary="Homo sapiens HG03378"]
|
 |
[1.37, 29.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 55217418 | 1.72% | 104783 |
| chr1 | 4759362 | 1.91% | 8857 |
| chr2 | 4892817 | 2.02% | 9506 |
| chr3 | 3965784 | 2.00% | 7718 |
| chr4 | 3377817 | 1.78% | 6678 |
| chr5 | 3447960 | 1.90% | 6716 |
| chr6 | 3818736 | 2.24% | 7335 |
| chr7 | 3125649 | 1.96% | 5989 |
| chr8 | 2877693 | 1.98% | 5665 |
| chr9 | 2191663 | 1.58% | 4165 |
| chr10 | 2651319 | 1.98% | 5053 |
| chr11 | 2537144 | 1.88% | 4778 |
| chr12 | 2762566 | 2.07% | 5195 |
| chr13 | 1611242 | 1.41% | 3099 |
| chr14 | 1691443 | 1.58% | 3136 |
| chr15 | 1489825 | 1.46% | 2734 |
| chr16 | 1455322 | 1.61% | 2577 |
| chr17 | 1697299 | 2.04% | 2956 |
| chr18 | 1308698 | 1.63% | 2573 |
| chr19 | 1327890 | 2.27% | 2059 |
| chr20 | 1106556 | 1.72% | 2116 |
| chr21 | 561390 | 1.20% | 1025 |
| chr22 | 590079 | 1.16% | 1023 |
| chrX | 1968622 | 1.26% | 3828 |
| chrY | 542 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 104783 | 150 | 2944 | 526.97 | 449 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF781JGR.bed.gz | 3.94 MB | ae055b793dd75a83454b268879c2deaa |
| ENCFF781JGR.tabix.bed.gz | 1.15 MB | e4327c29f29a4c2339e6acb12250c9f1 |
| ENCFF781JGR.tabix.bed.gz.tbi | 453.7 KB | 1cd0e672e2c2b4b532419446210a7759 |
| genomic_resource.yaml | 2.49 KB | 5ca84a5021a3c853cc63464eaed6a6bf |
| statistics/ |