ATAC-seq_ENCSR822BAD
ATAC-seq ENCSR822BAD [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (46 years)"]
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| Id: | ATAC-seq/ENCSR822BAD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR822BAD [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (46 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (46 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN409XCJ|/analyses/ENCAN409XCJ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF501GFW|/files/ENCFF501GFW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.18. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF699FPS|/files/ENCFF699FPS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.887565. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR822BAD | float |
ATAC-seq_ENCSR822BAD |
ATAC-seq ENCSR822BAD [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (46 years)"]
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[1.33, 29.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF501GFW.bed.gz | 3.74 MB | f2ca889b2aa9bf49d3ea43f18141c18e |
| ENCFF501GFW.bed.gz.dvc | 101.0 B | 8fda9d9ff23e0868272c4fc0ffc5ef33 |
| ENCFF501GFW.tabix.bed.gz | 1.07 MB | b00abfdb61a4ff38f0d58a4158bf928e |
| ENCFF501GFW.tabix.bed.gz.dvc | 107.0 B | ca9e42b8a7a2ba3eddcb7a83e35c2c18 |
| ENCFF501GFW.tabix.bed.gz.tbi | 412.68 KB | 41013baafa48264d10878ea6fa0d2364 |
| ENCFF501GFW.tabix.bed.gz.tbi.dvc | 110.0 B | d39f5c20045d995c2ae71e46da2c35d7 |
| genomic_resource.yaml | 2.73 KB | f1cee3ac4ed3d9c91054218737e19f72 |
| genomic_resource_original.yaml | 2.62 KB | 38263da4846a0322cb13a4fb1000c1a2 |
| statistics/ |