Resource

Id ATAC-seq/ENCSR822BADcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR822BAD [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (46 years)"]
Description
Labels
  • accession: ENCSR822BAD
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002078/
  • biosample_summary: Homo sapiens right cardiac atrium tissue female adult (46 years)
  • date_created: 2019-05-29T12:15:01.803681+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR822BAD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (46 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR822BAD float

ATAC-seq_ENCSR822BAD
ATAC-seq ENCSR822BAD [biosample_summary="Homo sapiens right cardiac atrium tissue female adult (46 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR822BAD [1.33, 29.4]
n
52,656,398
mean
4.88
sd
2.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 526563981.64% 97055
chr1 5057886 2.03% 9279
chr2 4063421 1.68% 7733
chr3 3241325 1.63% 6165
chr4 2082943 1.10% 4004
chr5 2694072 1.48% 5066
chr6 2816477 1.65% 5242
chr7 2655860 1.67% 4946
chr8 2209440 1.52% 4214
chr9 2351401 1.70% 4294
chr10 2650748 1.98% 5032
chr11 2828181 2.09% 5127
chr12 2517113 1.89% 4577
chr13 1189541 1.04% 2273
chr14 1609549 1.50% 2968
chr15 1851637 1.82% 3431
chr16 2014156 2.23% 3581
chr17 2713818 3.26% 4733
chr18 1078246 1.34% 2109
chr19 2332881 3.98% 3764
chr20 1506972 2.34% 2840
chr21 701171 1.50% 1287
chr22 1234379 2.43% 2232
chrX 1254252 0.80% 2154
chrY 929 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 97055 150 3085 542.54 438
global segment-length histogram

Files

Filename Size md5
ENCFF501GFW.bed.gz 3.74 MB f2ca889b2aa9bf49d3ea43f18141c18e
ENCFF501GFW.tabix.bed.gz 1.07 MB b00abfdb61a4ff38f0d58a4158bf928e
ENCFF501GFW.tabix.bed.gz.tbi 412.68 KB 41013baafa48264d10878ea6fa0d2364
genomic_resource.yaml 2.73 KB f1cee3ac4ed3d9c91054218737e19f72
statistics/