ATAC-seq_ENCSR821QHC
ATAC-seq ENCSR821QHC [biosample_summary="Homo sapiens HG02642"]
×
| Id: | ATAC-seq/ENCSR821QHC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR821QHC [biosample_summary="Homo sapiens HG02642"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN641XJK|/analyses/ENCAN641XJK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF705PBQ|/files/ENCFF705PBQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.689098. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF705PBQ|/files/ENCFF705PBQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.71. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR821QHC | float |
ATAC-seq_ENCSR821QHC |
ATAC-seq ENCSR821QHC [biosample_summary="Homo sapiens HG02642"]
|
|
[1.27, 41.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF731ZCZ.bed.gz | 4.03 MB | ca2a70c3b21c0af4dcb2a03784fbf4b1 |
| ENCFF731ZCZ.bed.gz.dvc | 101.0 B | 756d89c4c062fcb625235f883972a907 |
| ENCFF731ZCZ.tabix.bed.gz | 1.09 MB | 55f2e9da49dc474a3439655f26ed8bd0 |
| ENCFF731ZCZ.tabix.bed.gz.dvc | 107.0 B | 39620e41fd38ef36d633c91832a36159 |
| ENCFF731ZCZ.tabix.bed.gz.tbi | 438.47 KB | 567ae5baa767225e7881db542d96b756 |
| ENCFF731ZCZ.tabix.bed.gz.tbi.dvc | 110.0 B | 2c98875b450a73f76fae4d4415ce21d2 |
| genomic_resource.yaml | 2.49 KB | 3ffd1bee630bf91cab9639884879a5c5 |
| genomic_resource_original.yaml | 2.42 KB | ac8bd10825fa92a0cd8e53747e35dd26 |
| statistics/ |