Resource

Id ATAC-seq/ENCSR821JHDcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR821JHD [biosample_summary="Homo sapiens HG02623"]
Description
Labels
  • accession: ENCSR821JHD
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0010844/
  • biosample_summary: Homo sapiens HG02623
  • date_created: 2020-11-24T22:02:35.281071+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR821JHD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR821JHD float

ATAC-seq_ENCSR821JHD
ATAC-seq ENCSR821JHD [biosample_summary="Homo sapiens HG02623"]
 HISTOGRAM FOR ATAC-seq_ENCSR821JHD [1.56, 37.4]
n
48,963,962
mean
7.54
sd
3.86

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 489639621.52% 98958
chr1 4277257 1.72% 8480
chr2 4310366 1.78% 8969
chr3 3545975 1.79% 7465
chr4 3072850 1.62% 6556
chr5 3101004 1.71% 6449
chr6 3372031 1.97% 6863
chr7 2763702 1.73% 5661
chr8 2517228 1.73% 5232
chr9 1910490 1.38% 3819
chr10 2310675 1.73% 4641
chr11 2289237 1.69% 4584
chr12 2437085 1.83% 4894
chr13 1434459 1.25% 3012
chr14 1478614 1.38% 2935
chr15 1312972 1.29% 2611
chr16 1282374 1.42% 2367
chr17 1526106 1.83% 2778
chr18 1181237 1.47% 2500
chr19 1232253 2.10% 2035
chr20 972869 1.51% 1930
chr21 469530 1.01% 890
chr22 551715 1.09% 989
chrX 1493053 0.96% 3023
chrY 120880 0.21% 275
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 98958 150 2648 494.8 410
global segment-length histogram

Files

Filename Size md5
ENCFF724WEK.bed.gz 3.44 MB 9c3770844dc98eb8dc7e027fd9a8134a
ENCFF724WEK.tabix.bed.gz 1.06 MB de19ebd044c4e7f4d6b6a310d714873c
ENCFF724WEK.tabix.bed.gz.tbi 457.1 KB 286e49e8cd4af11bd76ec0e7fe7178b4
genomic_resource.yaml 1.82 KB 8c2c37352e43d9a5f0affe00c3fbb43b
statistics/