Resource

Id ATAC-seq/ENCSR814RGGcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR814RGG [biosample_summary="Homo sapiens ureter tissue female adult (47 years)"]
Description
Labels
  • accession: ENCSR814RGG
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000056/
  • biosample_summary: Homo sapiens ureter tissue female adult (47 years)
  • date_created: 2019-05-29T10:38:31.951040+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR814RGG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (47 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR814RGG float

ATAC-seq_ENCSR814RGG
ATAC-seq ENCSR814RGG [biosample_summary="Homo sapiens ureter tissue female adult (47 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR814RGG [1.38, 27.8]
n
63,748,307
mean
4.56
sd
2.62

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 637483071.98% 125586
chr1 6098710 2.45% 11907
chr2 4946539 2.04% 9993
chr3 3662164 1.85% 7435
chr4 2671418 1.40% 5506
chr5 3116207 1.72% 6363
chr6 3546707 2.08% 7066
chr7 3269762 2.05% 6499
chr8 2755433 1.90% 5695
chr9 2781255 2.01% 5453
chr10 3087317 2.31% 6263
chr11 3349955 2.48% 6506
chr12 2851411 2.14% 5598
chr13 1500941 1.31% 3076
chr14 2007767 1.88% 4003
chr15 2152188 2.11% 4237
chr16 2429140 2.69% 4592
chr17 3239989 3.89% 5933
chr18 1369708 1.70% 2887
chr19 2864156 4.89% 4928
chr20 1836946 2.85% 3677
chr21 958982 2.05% 1838
chr22 1565995 3.08% 2919
chrX 1682656 1.08% 3199
chrY 2961 0.01% 13
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 125586 150 4139 507.61 399
global segment-length histogram

Files

Filename Size md5
ENCFF977CYH.bed.gz 4.42 MB 52d45913741967279cd21d91323a8e41
ENCFF977CYH.tabix.bed.gz 1.35 MB 326ff3623949dfd3c1acf9e4f85dcba4
ENCFF977CYH.tabix.bed.gz.tbi 480.7 KB 4d6c0ed8372f075a00080923b862c0b6
genomic_resource.yaml 2.17 KB 7b462438eba81900fd708e1fc58b061b
statistics/