ATAC-seq_ENCSR812ZKP
ATAC-seq ENCSR812ZKP [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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| Id: | ATAC-seq/ENCSR812ZKP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR812ZKP [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (49 years) with amyotrophic lateral sclerosis output_type: replicated peaks audit_internal_action: Released analysis {ENCAN085JAW|/analyses/ENCAN085JAW/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF333UUT|/files/ENCFF333UUT/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.776902. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF333UUT|/files/ENCFF333UUT/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.79. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF379GTS|/files/ENCFF379GTS/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.779854. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF379GTS|/files/ENCFF379GTS/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.80. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR812ZKP | float |
ATAC-seq_ENCSR812ZKP |
ATAC-seq ENCSR812ZKP [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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[1.29, 40.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF594FVI.bed.gz | 6.52 MB | b5477c5f27c85874a3b860b7e2933004 |
| ENCFF594FVI.bed.gz.dvc | 101.0 B | 967f0ad7f37afe8501c45f3b32a97b6f |
| ENCFF594FVI.tabix.bed.gz | 1.79 MB | 38d15ccc2be1303e9320766b6e6557de |
| ENCFF594FVI.tabix.bed.gz.dvc | 107.0 B | f72932c252bbd3a175c01669186f4983 |
| ENCFF594FVI.tabix.bed.gz.tbi | 574.97 KB | e1a88cc22cace1f031cbf0d9fb3170cf |
| ENCFF594FVI.tabix.bed.gz.tbi.dvc | 110.0 B | 6002903e4885e77d584f83bae711ed8f |
| genomic_resource.yaml | 3.87 KB | bd3c481860415a5b02dc75dd4f6a54fa |
| genomic_resource_original.yaml | 3.75 KB | 580ab09e1bc07fde53314935904fbfa6 |
| statistics/ |