ATAC-seq_ENCSR808ZMK
ATAC-seq ENCSR808ZMK [biosample_summary="Homo sapiens pancreas tissue female adult (41 years)"]
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| Id: | ATAC-seq/ENCSR808ZMK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR808ZMK [biosample_summary="Homo sapiens pancreas tissue female adult (41 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN541XTU|/analyses/ENCAN541XTU/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN541XTU|/analyses/ENCAN541XTU/} has in progress subobject document {ce974b24-a358-4b21-b05c-afcf7396f93a|/documents/ce974b24-a358-4b21-b05c-afcf7396f93a/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF922AMD|/files/ENCFF922AMD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.883737. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF922AMD|/files/ENCFF922AMD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR808ZMK | float |
ATAC-seq_ENCSR808ZMK |
ATAC-seq ENCSR808ZMK [biosample_summary="Homo sapiens pancreas tissue female adult (41 years)"]
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[1.32, 35.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF480ITE.bed.gz | 6.23 MB | ad93d1ab771aaa9ce1d0f5f27b117ce3 |
| ENCFF480ITE.bed.gz.dvc | 101.0 B | 2745a12c67e6cbbbf9a5f7a9dfb684fd |
| ENCFF480ITE.tabix.bed.gz | 1.75 MB | 367aa1b174f06154f70587799d98aefc |
| ENCFF480ITE.tabix.bed.gz.dvc | 107.0 B | 1de6d8c1e8c14ad5bd646afa4a62de36 |
| ENCFF480ITE.tabix.bed.gz.tbi | 522.18 KB | 0111375337d9b675703b07ba69707afa |
| ENCFF480ITE.tabix.bed.gz.tbi.dvc | 110.0 B | cf45d3919cc31a9abf1aab0518527159 |
| genomic_resource.yaml | 2.78 KB | b1add93b5e08d969c1c6228a9bc48a14 |
| genomic_resource_original.yaml | 2.68 KB | ddfd246fdc900d8968417265024f854c |
| statistics/ |