Resource
| Id | ATAC-seq/ENCSR808ZMK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR808ZMK [biosample_summary="Homo sapiens pancreas tissue female adult (41 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN541XTU|/analyses/ENCAN541XTU/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN541XTU|/analyses/ENCAN541XTU/} has in progress subobject document {ce974b24-a358-4b21-b05c-afcf7396f93a|/documents/ce974b24-a358-4b21-b05c-afcf7396f93a/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF922AMD|/files/ENCFF922AMD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.883737. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF922AMD|/files/ENCFF922AMD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR808ZMK | float |
ATAC-seq_ENCSR808ZMK |
ATAC-seq ENCSR808ZMK [biosample_summary="Homo sapiens pancreas tissue female adult (41 years)"]
|
 |
[1.32, 35.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 92363568 | 2.87% | 161051 |
| chr1 | 8967055 | 3.60% | 15212 |
| chr2 | 7401046 | 3.06% | 13202 |
| chr3 | 5813850 | 2.93% | 10659 |
| chr4 | 4224601 | 2.22% | 7875 |
| chr5 | 4906150 | 2.70% | 8931 |
| chr6 | 5421061 | 3.17% | 9562 |
| chr7 | 4857180 | 3.05% | 8538 |
| chr8 | 4069048 | 2.80% | 7315 |
| chr9 | 3953069 | 2.86% | 6863 |
| chr10 | 4615634 | 3.45% | 8197 |
| chr11 | 4688606 | 3.47% | 7964 |
| chr12 | 4429318 | 3.32% | 7696 |
| chr13 | 2325661 | 2.03% | 4267 |
| chr14 | 3052368 | 2.85% | 5329 |
| chr15 | 3133725 | 3.07% | 5416 |
| chr16 | 3195885 | 3.54% | 5293 |
| chr17 | 4273493 | 5.13% | 6858 |
| chr18 | 1982673 | 2.47% | 3674 |
| chr19 | 3189608 | 5.44% | 4748 |
| chr20 | 2477712 | 3.84% | 4356 |
| chr21 | 1253435 | 2.68% | 2125 |
| chr22 | 1948301 | 3.83% | 3164 |
| chrX | 2182961 | 1.40% | 3802 |
| chrY | 1128 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 161051 | 150 | 3740 | 573.51 | 443 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF480ITE.bed.gz | 6.23 MB | ad93d1ab771aaa9ce1d0f5f27b117ce3 |
| ENCFF480ITE.tabix.bed.gz | 1.75 MB | 367aa1b174f06154f70587799d98aefc |
| ENCFF480ITE.tabix.bed.gz.tbi | 522.18 KB | 0111375337d9b675703b07ba69707afa |
| genomic_resource.yaml | 2.78 KB | b1add93b5e08d969c1c6228a9bc48a14 |
| statistics/ |