ATAC-seq_ENCSR803FKU
ATAC-seq ENCSR803FKU [biosample_summary="Homo sapiens T-helper 17 cell male adult (38 years)"]
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| Id: | ATAC-seq/ENCSR803FKU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR803FKU [biosample_summary="Homo sapiens T-helper 17 cell male adult (38 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN965YPA|/analyses/ENCAN965YPA/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF314YTZ|/files/ENCFF314YTZ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has a FRiP score of 0.16. audit_not_compliant: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF314YTZ|/files/ENCFF314YTZ/} (overlap peaks) and {ENCFF999QSA|/files/ENCFF999QSA/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline have 87882 and 44297 peaks. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR803FKU | float |
ATAC-seq_ENCSR803FKU |
ATAC-seq ENCSR803FKU [biosample_summary="Homo sapiens T-helper 17 cell male adult (38 years)"]
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[1.47, 32.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF314YTZ.bed.gz | 2.09 MB | b02c4d2d62fd79be8fbc27929646d229 |
| ENCFF314YTZ.bed.gz.dvc | 101.0 B | 56df1f4c32f2b85a92d93b96e592fc16 |
| ENCFF314YTZ.tabix.bed.gz | 698.71 KB | e040e74fcae05411f49640b4cd9453fd |
| ENCFF314YTZ.tabix.bed.gz.dvc | 106.0 B | 86dcba9429ead2b5f3fe16f44aa8d500 |
| ENCFF314YTZ.tabix.bed.gz.tbi | 331.55 KB | 295916b355485a9b83a22c0552c092ab |
| ENCFF314YTZ.tabix.bed.gz.tbi.dvc | 110.0 B | 159a9f1d1b7eeecbc77e93892df40aea |
| genomic_resource.yaml | 2.42 KB | e28a5670308ad7f9fcf6b6c0e739139c |
| genomic_resource_original.yaml | 2.33 KB | e678cee97aeae9c42a7dddcf2eb2f22e |
| statistics/ |