Resource

Id ATAC-seq/ENCSR803FKUcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR803FKU [biosample_summary="Homo sapiens T-helper 17 cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR803FKU
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000899/
  • biosample_summary: Homo sapiens T-helper 17 cell male adult (38 years)
  • date_created: 2021-09-23T04:55:29.542392+00:00
  • date_released: 2021-11-16
  • doi: 10.17989/ENCSR803FKU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment: This dataset cannot be repeated and will be released as is.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR803FKU float

ATAC-seq_ENCSR803FKU

ATAC-seq ENCSR803FKU [biosample_summary="Homo sapiens T-helper 17 cell male adult (38 years)"]
HISTOGRAM FOR ATAC-seq_ENCSR803FKU [1.47, 32.7]
n
29,274,071
mean
7.04
sd
4.24

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 292740710.91% 63132
chr1 2836073 1.14% 6013
chr2 2239868 0.92% 4973
chr3 1734027 0.87% 3795
chr4 1150260 0.60% 2503
chr5 1443833 0.80% 3212
chr6 1711216 1.00% 3705
chr7 1487429 0.93% 3229
chr8 1192881 0.82% 2646
chr9 1181807 0.85% 2570
chr10 1392577 1.04% 3066
chr11 1472016 1.09% 3184
chr12 1471137 1.10% 3136
chr13 654768 0.57% 1439
chr14 989894 0.92% 2129
chr15 972164 0.95% 2141
chr16 1137153 1.26% 2391
chr17 1580056 1.90% 3296
chr18 562506 0.70% 1277
chr19 1492135 2.55% 2964
chr20 849469 1.32% 1875
chr21 412978 0.88% 867
chr22 690287 1.36% 1462
chrX 597962 0.38% 1213
chrY 21575 0.04% 46
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63132 150 2423 463.7 382
global segment-length histogram

Files

Filename Size md5
ENCFF314YTZ.bed.gz 2.09 MB b02c4d2d62fd79be8fbc27929646d229
ENCFF314YTZ.tabix.bed.gz 698.71 KB e040e74fcae05411f49640b4cd9453fd
ENCFF314YTZ.tabix.bed.gz.tbi 331.55 KB 295916b355485a9b83a22c0552c092ab
genomic_resource.yaml 2.42 KB e28a5670308ad7f9fcf6b6c0e739139c
statistics/