ATAC-seq_ENCSR788TRR
ATAC-seq ENCSR788TRR [biosample_summary="Homo sapiens omental fat pad tissue female adult (51 years)"]
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| Id: | ATAC-seq/ENCSR788TRR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR788TRR [biosample_summary="Homo sapiens omental fat pad tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN715MTI|/analyses/ENCAN715MTI/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN715MTI|/analyses/ENCAN715MTI/} has in progress subobject document {693bfc58-5eb9-46e8-8217-59a1ab5b163f|/documents/693bfc58-5eb9-46e8-8217-59a1ab5b163f/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF096PUC|/files/ENCFF096PUC/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.15. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF550OUL|/files/ENCFF550OUL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.871107. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF550OUL|/files/ENCFF550OUL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR788TRR | float |
ATAC-seq_ENCSR788TRR |
ATAC-seq ENCSR788TRR [biosample_summary="Homo sapiens omental fat pad tissue female adult (51 years)"]
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[1.45, 23.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF096PUC.bed.gz | 3.6 MB | aa7e7a97cb07133e1e9997486ac5e103 |
| ENCFF096PUC.bed.gz.dvc | 101.0 B | f490d942c831ec3934f35b931072b8cd |
| ENCFF096PUC.tabix.bed.gz | 995.27 KB | 799247b51026131f02ae2429054b1612 |
| ENCFF096PUC.tabix.bed.gz.dvc | 107.0 B | 0c13a7816483c31998e88a3cc2e5ff1a |
| ENCFF096PUC.tabix.bed.gz.tbi | 397.1 KB | d5f69b82e9301e49929da6385460b813 |
| ENCFF096PUC.tabix.bed.gz.tbi.dvc | 110.0 B | 82610d71c777aed73d147b0c4eefa4b8 |
| genomic_resource.yaml | 3.21 KB | 85de7ccdc3ff1e22691c1aadaad8659d |
| genomic_resource_original.yaml | 3.1 KB | 78b6011f9de8eb8ba071338f1047febe |
| statistics/ |