Resource

Id ATAC-seq/ENCSR775SYUcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR775SYU [biosample_summary="Homo sapiens uterus tissue female adult (59 years)"]
Description
Labels
  • accession: ENCSR775SYU
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000995/
  • biosample_summary: Homo sapiens uterus tissue female adult (59 years)
  • date_created: 2019-06-02T06:58:07.956145+00:00
  • date_released: 2020-10-08
  • doi: 10.17989/ENCSR775SYU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (59 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR775SYU float

ATAC-seq_ENCSR775SYU
ATAC-seq ENCSR775SYU [biosample_summary="Homo sapiens uterus tissue female adult (59 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR775SYU [1.27, 26.2]
n
80,116,392
mean
3.9
sd
1.76

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 801163922.49% 109071
chr1 7426745 2.98% 9886
chr2 6339110 2.62% 8802
chr3 5092664 2.57% 7150
chr4 3622967 1.90% 5226
chr5 4062798 2.24% 5680
chr6 4753434 2.78% 6504
chr7 4110941 2.58% 5757
chr8 3422853 2.36% 4753
chr9 3705039 2.68% 5061
chr10 4066224 3.04% 5632
chr11 4085325 3.02% 5393
chr12 4091592 3.07% 5554
chr13 1953731 1.71% 2762
chr14 2502543 2.34% 3374
chr15 2753218 2.70% 3752
chr16 2753791 3.05% 3573
chr17 3778796 4.54% 4794
chr18 1694565 2.11% 2433
chr19 2892451 4.93% 3502
chr20 2171109 3.37% 2933
chr21 1086925 2.33% 1558
chr22 1648675 3.24% 2185
chrX 2099677 1.35% 2802
chrY 1219 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 109071 150 4244 734.53 591
global segment-length histogram

Files

Filename Size md5
ENCFF867FAJ.bed.gz 5.53 MB 2d3df39c5d1be1f8d60297580360e029
ENCFF867FAJ.tabix.bed.gz 1.23 MB 85832bb761443f79238998a47f2fb076
ENCFF867FAJ.tabix.bed.gz.tbi 397.73 KB 7f8ca4373e50494883c80aad23b1b2d7
genomic_resource.yaml 1.61 KB dfb5b6cb5ead2bbfc6a4cd7179f2b3e8
statistics/