Resource

Id ATAC-seq/ENCSR762YFDcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR762YFD [biosample_summary="Homo sapiens GM18520"]
Description
Labels
  • accession: ENCSR762YFD
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0024898/
  • biosample_summary: Homo sapiens GM18520
  • date_created: 2020-11-24T22:02:44.685775+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR762YFD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR762YFD float

ATAC-seq_ENCSR762YFD
ATAC-seq ENCSR762YFD [biosample_summary="Homo sapiens GM18520"]
 HISTOGRAM FOR ATAC-seq_ENCSR762YFD [1.55, 34.5]
n
45,488,270
mean
7.76
sd
4.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 454882701.41% 96126
chr1 4061053 1.63% 8430
chr2 3989618 1.65% 8665
chr3 3270879 1.65% 7129
chr4 2829751 1.49% 6276
chr5 2882901 1.59% 6278
chr6 3135592 1.84% 6691
chr7 2532652 1.59% 5413
chr8 2305099 1.59% 5035
chr9 1786616 1.29% 3808
chr10 2116095 1.58% 4516
chr11 2119931 1.57% 4463
chr12 2216328 1.66% 4634
chr13 1310949 1.15% 2833
chr14 1413492 1.32% 2919
chr15 1212226 1.19% 2482
chr16 1220797 1.35% 2344
chr17 1515101 1.82% 2928
chr18 1090676 1.36% 2393
chr19 1170255 2.00% 2052
chr20 925247 1.44% 1929
chr21 455860 0.98% 897
chr22 567157 1.12% 1060
chrX 1359259 0.87% 2948
chrY 736 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 96126 150 2674 473.22 404
global segment-length histogram

Files

Filename Size md5
ENCFF690BFN.bed.gz 3.19 MB c9e37912d422bdd7f8da6c7289f889e9
ENCFF690BFN.tabix.bed.gz 1.04 MB ee95f036ea0e5e8f9cc251ca1c007a0d
ENCFF690BFN.tabix.bed.gz.tbi 442.59 KB e9860d65af0b53619e505343159d6a2c
genomic_resource.yaml 1.28 KB c13035b986b320fee3a175a334393b5d
statistics/