Resource

Id ATAC-seq/ENCSR745CGGcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR745CGG [biosample_summary="Homo sapiens heart left ventricle tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR745CGG
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002084/
  • biosample_summary: Homo sapiens heart left ventricle tissue male adult (54 years)
  • date_created: 2019-07-30T07:18:09.546896+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR745CGG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR745CGG float

ATAC-seq_ENCSR745CGG
ATAC-seq ENCSR745CGG [biosample_summary="Homo sapiens heart left ventricle tissue male adult (54 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR745CGG [1.46, 31.1]
n
60,546,853
mean
5.05
sd
2.88

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 605468531.88% 126390
chr1 5815273 2.34% 11983
chr2 4825589 1.99% 10315
chr3 3845859 1.94% 8185
chr4 2531205 1.33% 5533
chr5 3241043 1.79% 6991
chr6 3378655 1.98% 7181
chr7 3080998 1.93% 6623
chr8 2644685 1.82% 5727
chr9 2633136 1.90% 5474
chr10 3094253 2.31% 6559
chr11 3183019 2.36% 6455
chr12 2900235 2.18% 5963
chr13 1466118 1.28% 3242
chr14 1865180 1.74% 3832
chr15 2145642 2.10% 4451
chr16 2256806 2.50% 4501
chr17 2878142 3.46% 5690
chr18 1312355 1.63% 2949
chr19 2385071 4.07% 4301
chr20 1703923 2.64% 3584
chr21 799487 1.71% 1656
chr22 1410943 2.78% 2878
chrX 1100086 0.70% 2200
chrY 49150 0.09% 117
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 126390 150 2714 479.05 398
global segment-length histogram

Files

Filename Size md5
ENCFF548AUJ.bed.gz 4.29 MB 7259188a5d130fb337e397956d9329b9
ENCFF548AUJ.tabix.bed.gz 1.36 MB 68e84d114d5fecb9082d1776e48e47d7
ENCFF548AUJ.tabix.bed.gz.tbi 480.64 KB 4faaf5ea8f7a829e96fb305e3e6b50ba
genomic_resource.yaml 2.72 KB b217817243e7537a5c638f393ad3311d
statistics/