ATAC-seq_ENCSR736CIN
ATAC-seq ENCSR736CIN [biosample_summary="Homo sapiens left cardiac atrium tissue female adult (66 years)"]
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| Id: | ATAC-seq/ENCSR736CIN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR736CIN [biosample_summary="Homo sapiens left cardiac atrium tissue female adult (66 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (66 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN778YTF|/analyses/ENCAN778YTF/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF407YHM|/files/ENCFF407YHM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.17. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF493IIE|/files/ENCFF493IIE/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.871826. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF407YHM|/files/ENCFF407YHM/} (overlap peaks) and {ENCFF239PZJ|/files/ENCFF239PZJ/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 108670 and 48544 peaks. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR736CIN | float |
ATAC-seq_ENCSR736CIN |
ATAC-seq ENCSR736CIN [biosample_summary="Homo sapiens left cardiac atrium tissue female adult (66 years)"]
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[1.5, 28.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF407YHM.bed.gz | 2.63 MB | cc240db6bb673d1f9ddcf3104c1e65e7 |
| ENCFF407YHM.bed.gz.dvc | 101.0 B | a5b3ac48e4823e9e358c13734574dad7 |
| ENCFF407YHM.tabix.bed.gz | 813.65 KB | b97a6504ff7df95b622cadb8bdf7167b |
| ENCFF407YHM.tabix.bed.gz.dvc | 106.0 B | d010ba53fcba729731f5c00362dfd9b7 |
| ENCFF407YHM.tabix.bed.gz.tbi | 353.16 KB | 8d3a246d692af9bced4aa0f09c26b0eb |
| ENCFF407YHM.tabix.bed.gz.tbi.dvc | 110.0 B | a2fdab952726c2a5ceb1ac287de5e089 |
| genomic_resource.yaml | 3.27 KB | 7bf772c2aef267e8500a91d218d62630 |
| genomic_resource_original.yaml | 3.16 KB | 8e40eef2beaf14cf8ad60618f1ae25dc |
| statistics/ |