ATAC-seq_ENCSR731ODJ
ATAC-seq ENCSR731ODJ [biosample_summary="Homo sapiens left cardiac atrium tissue female adult (58 years)"]
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| Id: | ATAC-seq/ENCSR731ODJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR731ODJ [biosample_summary="Homo sapiens left cardiac atrium tissue female adult (58 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (58 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN619NEY|/analyses/ENCAN619NEY/} has in progress subobject document {0495e15f-47ee-4528-9713-69ac10bc5e3e|/documents/0495e15f-47ee-4528-9713-69ac10bc5e3e/} audit_internal_action: Released analysis {ENCAN619NEY|/analyses/ENCAN619NEY/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: Alignment file {ENCFF956OQF|/files/ENCFF956OQF/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 15967206 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF956OQF|/files/ENCFF956OQF/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.861273. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF515EVC|/files/ENCFF515EVC/} (overlap peaks) and {ENCFF991MKU|/files/ENCFF991MKU/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 116652 and 53182 peaks. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR731ODJ | float |
ATAC-seq_ENCSR731ODJ |
ATAC-seq ENCSR731ODJ [biosample_summary="Homo sapiens left cardiac atrium tissue female adult (58 years)"]
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[1.52, 30.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF515EVC.bed.gz | 2.84 MB | 67db93f88088e1fdc047e3b77971f642 |
| ENCFF515EVC.bed.gz.dvc | 101.0 B | f0df2e3529bd5bd3e1c4dae142eca4be |
| ENCFF515EVC.tabix.bed.gz | 872.83 KB | 2668bd0ae0eb6e952a864fd7a1bb8885 |
| ENCFF515EVC.tabix.bed.gz.dvc | 106.0 B | ab9e2bd84b96330f8940eed2ccb26b4b |
| ENCFF515EVC.tabix.bed.gz.tbi | 363.98 KB | 94179be758a43933280f731b3f1c2900 |
| ENCFF515EVC.tabix.bed.gz.tbi.dvc | 110.0 B | b921030058bb5cd27054fda48707f83c |
| genomic_resource.yaml | 3.09 KB | fd0871b5764857a00ee69dbabe1b1ca5 |
| genomic_resource_original.yaml | 2.98 KB | 7b9a86a062baadce47ef694bbf40a2be |
| statistics/ |