ATAC-seq_ENCSR729FNL
ATAC-seq ENCSR729FNL [biosample_summary="Homo sapiens posterior cingulate cortex tissue male adult (20 years)"]
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| Id: | ATAC-seq/ENCSR729FNL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR729FNL [biosample_summary="Homo sapiens posterior cingulate cortex tissue male adult (20 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (20 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN343RLI|/analyses/ENCAN343RLI/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF129OYC|/files/ENCFF129OYC/} processed by ATAC-seq ENCODE4 v1.9.2 GRCh38 pipeline has a FRiP score of 0.04. audit_not_compliant: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF129OYC|/files/ENCFF129OYC/} (overlap peaks) and {ENCFF221FSW|/files/ENCFF221FSW/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.2 GRCh38 pipeline have 39396 and 11331 peaks. audit_warning: Transcription Start Site (TSS) enrichment values for alignments to the human genome GRCh38 are concerning when < 5, acceptable between 5 and 7, and ideal when > 7. ENCODE processed file {ENCFF876ELG|/files/ENCFF876ELG/} processed by ATAC-seq ENCODE4 v1.9.2 GRCh38 pipeline has a TSS enrichment value of 5.992365727913902. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF876ELG|/files/ENCFF876ELG/} processed by ATAC-seq ENCODE4 v1.9.2 GRCh38 pipeline was generated from a library with NRF value of 0.857676. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR729FNL | float |
ATAC-seq_ENCSR729FNL |
ATAC-seq ENCSR729FNL [biosample_summary="Homo sapiens posterior cingulate cortex tissue male adult (20 years)"]
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[2.01, 16.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF129OYC.bed.gz | 885.51 KB | f7ca540719874aa003fd85e53634814b |
| ENCFF129OYC.bed.gz.dvc | 100.0 B | 03304e50764bf7a77f53f3c8b7876f1b |
| ENCFF129OYC.tabix.bed.gz | 345.09 KB | 080bafc9c47af58ba43aff44b4d177b7 |
| ENCFF129OYC.tabix.bed.gz.dvc | 106.0 B | 5d60f5e9ae886a8fd641804f9469f1fc |
| ENCFF129OYC.tabix.bed.gz.tbi | 228.84 KB | bbb3877dfe60ac20b7d731f5e44eff76 |
| ENCFF129OYC.tabix.bed.gz.tbi.dvc | 110.0 B | b8f526714b8a29b8d459ce9267956191 |
| genomic_resource.yaml | 3.29 KB | 3d7c0c94990ed0ae2442ddea94a0711f |
| genomic_resource_original.yaml | 3.17 KB | 64b391b81f1da359f66ff2e59679fe08 |
| statistics/ |