| Id: | ATAC-seq/ENCSR718HWW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR718HWW [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN589AAL|/analyses/ENCAN589AAL/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF587ODZ|/files/ENCFF587ODZ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.747795. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF587ODZ|/files/ENCFF587ODZ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.76. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR718HWW | float |
ATAC-seq_ENCSR718HWW |
ATAC-seq ENCSR718HWW [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"]
|
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[1.37, 44] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF739WIV.bed.gz | 3.95 MB | 679465c0cc09302f9e8b38ed5eea5b7c |
| ENCFF739WIV.bed.gz.dvc | 101.0 B | bb5b791983ff72f0bed8369f2b910522 |
| ENCFF739WIV.tabix.bed.gz | 1.1 MB | ea9c99f6e398c634976d6967d786192b |
| ENCFF739WIV.tabix.bed.gz.dvc | 107.0 B | 887246945943fe9af282d4f117af376d |
| ENCFF739WIV.tabix.bed.gz.tbi | 399.03 KB | 2f8b011603272df13f72788d872db91b |
| ENCFF739WIV.tabix.bed.gz.tbi.dvc | 110.0 B | 4f5b0feae5f9e9d881f18e2795d28d09 |
| genomic_resource.yaml | 2.95 KB | 36ad8b06c0d33a4accc7dc5933552fa6 |
| genomic_resource_original.yaml | 2.78 KB | e8e61ba05e4a9df9e94e62844a78d6b9 |
| statistics/ |