ATAC-seq_ENCSR712ZRY
ATAC-seq ENCSR712ZRY [biosample_summary="Homo sapiens GM19463"]
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| Id: | ATAC-seq/ENCSR712ZRY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR712ZRY [biosample_summary="Homo sapiens GM19463"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN898MQU|/analyses/ENCAN898MQU/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN898MQU|/analyses/ENCAN898MQU/} has in progress subobject document {bc4d1874-b82d-41d1-b84a-46f8c71c5b14|/documents/bc4d1874-b82d-41d1-b84a-46f8c71c5b14/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF575DFU|/files/ENCFF575DFU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.86959. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF575DFU|/files/ENCFF575DFU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR712ZRY | float |
ATAC-seq_ENCSR712ZRY |
ATAC-seq ENCSR712ZRY [biosample_summary="Homo sapiens GM19463"]
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[1.44, 43.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF693ODH.bed.gz | 4.48 MB | 3d147b3017644c864e1ebd3187459fb3 |
| ENCFF693ODH.bed.gz.dvc | 101.0 B | 46dabec888e4cbbd7c40733aecb58b6e |
| ENCFF693ODH.tabix.bed.gz | 1.36 MB | eb2622c249400ca0a8ff1f1daf55ffe3 |
| ENCFF693ODH.tabix.bed.gz.dvc | 107.0 B | 1e0566127616a488df7bee86fe25c0ff |
| ENCFF693ODH.tabix.bed.gz.tbi | 518.67 KB | 46e2d67708d8162e3ef8b81123c85e75 |
| ENCFF693ODH.tabix.bed.gz.tbi.dvc | 110.0 B | ce777ca0a3b5e5efcd316cbae0120bf1 |
| genomic_resource.yaml | 2.7 KB | 0f5476a40282bc8cef1c52c0ce0227e1 |
| genomic_resource_original.yaml | 2.63 KB | 399a8417225a380d82d2d146e07469d5 |
| statistics/ |