Resource
| Id | ATAC-seq/ENCSR712ZRY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR712ZRY [biosample_summary="Homo sapiens GM19463"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN898MQU|/analyses/ENCAN898MQU/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN898MQU|/analyses/ENCAN898MQU/} has in progress subobject document {bc4d1874-b82d-41d1-b84a-46f8c71c5b14|/documents/bc4d1874-b82d-41d1-b84a-46f8c71c5b14/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF575DFU|/files/ENCFF575DFU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.86959. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF575DFU|/files/ENCFF575DFU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR712ZRY | float |
ATAC-seq_ENCSR712ZRY |
ATAC-seq ENCSR712ZRY [biosample_summary="Homo sapiens GM19463"]
|
 |
[1.44, 43.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 64273130 | 2.00% | 127017 |
| chr1 | 5533881 | 2.22% | 10788 |
| chr2 | 5722215 | 2.36% | 11513 |
| chr3 | 4744753 | 2.39% | 9567 |
| chr4 | 4117818 | 2.16% | 8344 |
| chr5 | 4153079 | 2.29% | 8323 |
| chr6 | 4441065 | 2.60% | 8822 |
| chr7 | 3692879 | 2.32% | 7343 |
| chr8 | 3361285 | 2.32% | 6809 |
| chr9 | 2559040 | 1.85% | 5087 |
| chr10 | 3096581 | 2.31% | 6148 |
| chr11 | 3022910 | 2.24% | 5872 |
| chr12 | 3042484 | 2.28% | 5997 |
| chr13 | 1941087 | 1.70% | 3923 |
| chr14 | 1948708 | 1.82% | 3772 |
| chr15 | 1704579 | 1.67% | 3336 |
| chr16 | 1596093 | 1.77% | 2953 |
| chr17 | 1803604 | 2.17% | 3388 |
| chr18 | 1561129 | 1.94% | 3168 |
| chr19 | 1343261 | 2.29% | 2349 |
| chr20 | 1252008 | 1.94% | 2491 |
| chr21 | 572372 | 1.23% | 1082 |
| chr22 | 654090 | 1.29% | 1209 |
| chrX | 2407098 | 1.54% | 4729 |
| chrY | 1111 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 127017 | 150 | 2517 | 506.02 | 430 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF693ODH.bed.gz | 4.48 MB | 3d147b3017644c864e1ebd3187459fb3 |
| ENCFF693ODH.tabix.bed.gz | 1.36 MB | eb2622c249400ca0a8ff1f1daf55ffe3 |
| ENCFF693ODH.tabix.bed.gz.tbi | 518.67 KB | 46e2d67708d8162e3ef8b81123c85e75 |
| genomic_resource.yaml | 2.7 KB | 0f5476a40282bc8cef1c52c0ce0227e1 |
| statistics/ |