ATAC-seq_ENCSR709QRD
ATAC-seq ENCSR709QRD [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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| Id: | ATAC-seq/ENCSR709QRD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR709QRD [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult with amyotrophic lateral sclerosis output_type: replicated peaks audit_internal_action: Released analysis {ENCAN966AGL|/analyses/ENCAN966AGL/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF344XTT|/files/ENCFF344XTT/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.687141. audit_not_compliant: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF344XTT|/files/ENCFF344XTT/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.69. audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF733AZN|/files/ENCFF733AZN/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.688685. audit_not_compliant: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF733AZN|/files/ENCFF733AZN/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.69. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR709QRD | float |
ATAC-seq_ENCSR709QRD |
ATAC-seq ENCSR709QRD [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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[1.16, 42.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF010FOR.bed.gz | 5.53 MB | a061bd58a9bb7bd2ad400cead73bceb7 |
| ENCFF010FOR.bed.gz.dvc | 101.0 B | f84d43f06dc410e33e13ae81a8ee32b2 |
| ENCFF010FOR.tabix.bed.gz | 1.54 MB | 16505a06ada3d7914e5bee4ea45ae587 |
| ENCFF010FOR.tabix.bed.gz.dvc | 107.0 B | 3011a9ba9cc151f8a38fb573bcb85048 |
| ENCFF010FOR.tabix.bed.gz.tbi | 524.29 KB | 73c17d1b5b9549276a6d03b3f2e5e465 |
| ENCFF010FOR.tabix.bed.gz.tbi.dvc | 110.0 B | 97513812b4b1b71603a1c1cf22c119f2 |
| genomic_resource.yaml | 3.88 KB | 336ca3c8e2a51350456fd426e9481801 |
| genomic_resource_original.yaml | 3.76 KB | d9bddb5c810cb7ad3d741cf3e7b9f27e |
| statistics/ |