Resource

Id ATAC-seq/ENCSR706GDQcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR706GDQ [biosample_summary="Homo sapiens GM19455"]
Description
Labels
  • accession: ENCSR706GDQ
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0026863/
  • biosample_summary: Homo sapiens GM19455
  • date_created: 2020-11-24T22:02:38.819495+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR706GDQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR706GDQ float

ATAC-seq_ENCSR706GDQ

ATAC-seq ENCSR706GDQ [biosample_summary="Homo sapiens GM19455"]
HISTOGRAM FOR ATAC-seq_ENCSR706GDQ [1.57, 27.6]
n
46,896,104
mean
6.37
sd
2.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 468961041.46% 82517
chr1 4279024 1.72% 7442
chr2 4111876 1.70% 7405
chr3 3319948 1.67% 6053
chr4 2686116 1.41% 5022
chr5 2854923 1.57% 5139
chr6 3161124 1.85% 5653
chr7 2692951 1.69% 4829
chr8 2330208 1.61% 4250
chr9 1881255 1.36% 3319
chr10 2249335 1.68% 3959
chr11 2292563 1.70% 4015
chr12 2344413 1.76% 4077
chr13 1247514 1.09% 2261
chr14 1422033 1.33% 2440
chr15 1303256 1.28% 2241
chr16 1306782 1.45% 2122
chr17 1584892 1.90% 2544
chr18 1022196 1.27% 1876
chr19 1300938 2.22% 1931
chr20 981858 1.52% 1695
chr21 441132 0.94% 727
chr22 594397 1.17% 925
chrX 1384484 0.89% 2400
chrY 102886 0.18% 192
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82517 150 2837 568.32 469
global segment-length histogram

Files

Filename Size md5
ENCFF160DPC.bed.gz 3.42 MB 17ed7f43a817c83578b19e6ad861475d
ENCFF160DPC.tabix.bed.gz 930.03 KB 5251e6055d865fc67edc8433a9ec09be
ENCFF160DPC.tabix.bed.gz.tbi 401.65 KB 1feeb5383cf2f571c510971c3611fd9d
genomic_resource.yaml 1.28 KB d6511cf89e14ecbdc480eba09f7a515a
statistics/