ATAC-seq_ENCSR705KEB
ATAC-seq ENCSR705KEB [biosample_summary="Homo sapiens pancreas tissue female adult (59 years)"]
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| Id: | ATAC-seq/ENCSR705KEB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR705KEB [biosample_summary="Homo sapiens pancreas tissue female adult (59 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN522HUN|/analyses/ENCAN522HUN/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN522HUN|/analyses/ENCAN522HUN/} has in progress subobject document {8b91b8f9-8584-4157-a71e-c004a91bd3e7|/documents/8b91b8f9-8584-4157-a71e-c004a91bd3e7/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF978HXT|/files/ENCFF978HXT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.881882. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF978HXT|/files/ENCFF978HXT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR705KEB | float |
ATAC-seq_ENCSR705KEB |
ATAC-seq ENCSR705KEB [biosample_summary="Homo sapiens pancreas tissue female adult (59 years)"]
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[1.34, 38.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF305BGH.bed.gz | 3.74 MB | 68b103bbcb6ad914e345a162de6a73f0 |
| ENCFF305BGH.bed.gz.dvc | 101.0 B | 99d581e96c229444d9ec450bfffc4e62 |
| ENCFF305BGH.tabix.bed.gz | 977.5 KB | a75fbb83326f573d2fa15663b42908c3 |
| ENCFF305BGH.tabix.bed.gz.dvc | 107.0 B | ac64d6852ddf7eafdefe48af0dfe71be |
| ENCFF305BGH.tabix.bed.gz.tbi | 378.06 KB | dc1fd6ed8b625a89565c5cf705652d40 |
| ENCFF305BGH.tabix.bed.gz.tbi.dvc | 110.0 B | 9473ecbad9ac6d93ee3d4d8159ebc6ae |
| genomic_resource.yaml | 2.78 KB | 7ef2b810027170ec2fc704812c923b0c |
| genomic_resource_original.yaml | 2.68 KB | a08a2b9fe6f4956d02260aef5feb851f |
| statistics/ |