ATAC-seq_ENCSR704VZY
ATAC-seq ENCSR704VZY [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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| Id: | ATAC-seq/ENCSR704VZY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR704VZY [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male child (6 years) with amyotrophic lateral sclerosis output_type: replicated peaks audit_internal_action: Released analysis {ENCAN326LEB|/analyses/ENCAN326LEB/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF577CYP|/files/ENCFF577CYP/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.70665. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF577CYP|/files/ENCFF577CYP/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.73. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF353HIF|/files/ENCFF353HIF/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.726472. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF353HIF|/files/ENCFF353HIF/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR704VZY | float |
ATAC-seq_ENCSR704VZY |
ATAC-seq ENCSR704VZY [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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[1.12, 40.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF487GKW.bed.gz | 5.99 MB | 19137ffc81f8b769c080fef316f71d7f |
| ENCFF487GKW.bed.gz.dvc | 101.0 B | 00f6bd96046c08caca9e136ef244f1a7 |
| ENCFF487GKW.tabix.bed.gz | 1.71 MB | 1d8306432acfa58618dc4fea80541471 |
| ENCFF487GKW.tabix.bed.gz.dvc | 107.0 B | a0bb2f5a013c93e18ed5c890390a75e8 |
| ENCFF487GKW.tabix.bed.gz.tbi | 570.31 KB | 1a895477f8485f3a30b6b5ea9c441b58 |
| ENCFF487GKW.tabix.bed.gz.tbi.dvc | 110.0 B | 51af011c27b32b5fd4fb70c58c470fff |
| genomic_resource.yaml | 3.87 KB | 51098bca25c7e66c433d92b00775753c |
| genomic_resource_original.yaml | 3.75 KB | a54485996b7e8bd8a0a8e0a54acecad6 |
| statistics/ |