| Id: | ATAC-seq/ENCSR700HPA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR700HPA [biosample_summary="Homo sapiens GM18499"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN833QRG|/analyses/ENCAN833QRG/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: Alignment file {ENCFF617WPF|/files/ENCFF617WPF/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 17107587 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF647UDQ|/files/ENCFF647UDQ/} (overlap peaks) and {ENCFF452XUT|/files/ENCFF452XUT/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 118210 and 56440 peaks. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR700HPA | float |
ATAC-seq_ENCSR700HPA |
ATAC-seq ENCSR700HPA [biosample_summary="Homo sapiens GM18499"]
|
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[1.6, 32.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF647UDQ.bed.gz | 2.89 MB | ac13a52e3d21eaf1187b08f46305d271 |
| ENCFF647UDQ.bed.gz.dvc | 101.0 B | 6e6374f57b2da3647867cfa784f8fc6d |
| ENCFF647UDQ.tabix.bed.gz | 945.8 KB | 87ba5233023d971c187407b8e36dc970 |
| ENCFF647UDQ.tabix.bed.gz.dvc | 106.0 B | 92f2d9fbfeb5348f14a4f8095f48ee04 |
| ENCFF647UDQ.tabix.bed.gz.tbi | 411.9 KB | 1645a1173e6c19b4f4bf063d83237c49 |
| ENCFF647UDQ.tabix.bed.gz.tbi.dvc | 110.0 B | 38a44e39f98a8b4f722992104a94dc0f |
| genomic_resource.yaml | 2.23 KB | 44a3a9f70977e67e1b04add8b0f9982a |
| genomic_resource_original.yaml | 2.16 KB | 2b1d4395550150a6a5437e3ce595ca8d |
| statistics/ |