Resource
| Id | ATAC-seq/ENCSR695FLC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR695FLC [biosample_summary="Homo sapiens mucosa of gallbladder tissue female child (16 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female child (16 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN040NKK|/analyses/ENCAN040NKK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN040NKK|/analyses/ENCAN040NKK/} has in progress subobject document {90b6cf9b-a0c4-4b82-8a1e-3846a5d014d2|/documents/90b6cf9b-a0c4-4b82-8a1e-3846a5d014d2/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF724ICE|/files/ENCFF724ICE/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.891428. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR695FLC | float |
ATAC-seq_ENCSR695FLC |
ATAC-seq ENCSR695FLC [biosample_summary="Homo sapiens mucosa of gallbladder tissue female child (16 years)"]
|
 |
[1.32, 40.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 93183808 | 2.90% | 169914 |
| chr1 | 9034790 | 3.63% | 16129 |
| chr2 | 7696389 | 3.18% | 14341 |
| chr3 | 5868237 | 2.96% | 11069 |
| chr4 | 4647042 | 2.44% | 8934 |
| chr5 | 4906544 | 2.70% | 9299 |
| chr6 | 5546040 | 3.25% | 10143 |
| chr7 | 4777759 | 3.00% | 8791 |
| chr8 | 4021579 | 2.77% | 7654 |
| chr9 | 3947727 | 2.85% | 7186 |
| chr10 | 4433318 | 3.31% | 8202 |
| chr11 | 4912475 | 3.64% | 8868 |
| chr12 | 4316952 | 3.24% | 7885 |
| chr13 | 2392647 | 2.09% | 4490 |
| chr14 | 3010125 | 2.81% | 5435 |
| chr15 | 3097174 | 3.04% | 5614 |
| chr16 | 3068702 | 3.40% | 5263 |
| chr17 | 4210711 | 5.06% | 7084 |
| chr18 | 2100115 | 2.61% | 3982 |
| chr19 | 3095331 | 5.28% | 4864 |
| chr20 | 2496073 | 3.87% | 4572 |
| chr21 | 1161423 | 2.49% | 2090 |
| chr22 | 1858823 | 3.66% | 3169 |
| chrX | 2582262 | 1.65% | 4844 |
| chrY | 1570 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 169914 | 150 | 3271 | 548.42 | 432 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF580HLQ.bed.gz | 6.4 MB | 71c53e06c880087de28a1228f2b2a72a |
| ENCFF580HLQ.tabix.bed.gz | 1.85 MB | 236c60a409982c2db807e4149f061fe9 |
| ENCFF580HLQ.tabix.bed.gz.tbi | 538.57 KB | da4c170047a1b35f9f1862b2263d08ae |
| genomic_resource.yaml | 2.18 KB | 7f84277ba010bfee30a6d890eb7290d6 |
| statistics/ |