Resource

Id ATAC-seq/ENCSR685ZMPcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR685ZMP [biosample_summary="Homo sapiens right lobe of liver tissue female adult (41 years)"]
Description
Labels
  • accession: ENCSR685ZMP
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001114/
  • biosample_summary: Homo sapiens right lobe of liver tissue female adult (41 years)
  • date_created: 2019-05-25T06:17:58.820638+00:00
  • date_released: 2020-08-20
  • doi: 10.17989/ENCSR685ZMP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR685ZMP float

ATAC-seq_ENCSR685ZMP

ATAC-seq ENCSR685ZMP [biosample_summary="Homo sapiens right lobe of liver tissue female adult (41 years)"]
HISTOGRAM FOR ATAC-seq_ENCSR685ZMP [1.3, 36.1]
n
107,926,259
mean
6.39
sd
3.46

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1079262593.35% 180865
chr1 10254656 4.12% 16961
chr2 8725538 3.60% 14872
chr3 7102529 3.58% 12233
chr4 4879673 2.57% 8600
chr5 5774549 3.18% 9987
chr6 6480365 3.79% 10907
chr7 5576893 3.50% 9377
chr8 4849738 3.34% 8365
chr9 4681666 3.38% 7816
chr10 5426086 4.06% 9111
chr11 5352577 3.96% 8856
chr12 5352220 4.02% 8964
chr13 2746978 2.40% 4646
chr14 3423269 3.20% 5710
chr15 3565990 3.50% 5889
chr16 3725772 4.12% 6009
chr17 4661408 5.60% 7355
chr18 2416915 3.01% 4152
chr19 3458572 5.90% 5217
chr20 2786826 4.32% 4650
chr21 1395252 2.99% 2244
chr22 2226220 4.38% 3506
chrX 3060538 1.96% 5431
chrY 2029 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 180865 150 4127 596.72 477
global segment-length histogram

Files

Filename Size md5
ENCFF933ZJW.bed.gz 6.96 MB b22989c595d1f39e1806743d47a935c6
ENCFF933ZJW.tabix.bed.gz 1.98 MB 4273f3f38c8aa221b28d33149b15e8e8
ENCFF933ZJW.tabix.bed.gz.tbi 527.18 KB 073a9410f79cad18f2dba01e31db60c1
genomic_resource.yaml 1.65 KB 0fa4072864418f4af335dfe51f69d1a3
statistics/