ATAC-seq_ENCSR685OFR
ATAC-seq ENCSR685OFR [biosample_summary="Homo sapiens naive B cell female adult (39 years)"]
×
| Id: | ATAC-seq/ENCSR685OFR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR685OFR [biosample_summary="Homo sapiens naive B cell female adult (39 years)"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (39 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN160XVS|/analyses/ENCAN160XVS/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF402TQJ|/files/ENCFF402TQJ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has 22532527 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: Alignment file {ENCFF271LEW|/files/ENCFF271LEW/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has 21039551 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF402TQJ|/files/ENCFF402TQJ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.847443. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF402TQJ|/files/ENCFF402TQJ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF271LEW|/files/ENCFF271LEW/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.848575. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF271LEW|/files/ENCFF271LEW/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR685OFR | float |
ATAC-seq_ENCSR685OFR |
ATAC-seq ENCSR685OFR [biosample_summary="Homo sapiens naive B cell female adult (39 years)"]
|
|
[1.25, 46.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF424JEX.bed.gz | 2.94 MB | 7b7dc1898bdd4b3db5934132ac7bda25 |
| ENCFF424JEX.bed.gz.dvc | 101.0 B | ec0b80270d13e18028d780f705ca3b9b |
| ENCFF424JEX.tabix.bed.gz | 855.33 KB | 1f9adc00b5ebd661b66612162367bbc2 |
| ENCFF424JEX.tabix.bed.gz.dvc | 106.0 B | a19243798b73587627d46e02dace683f |
| ENCFF424JEX.tabix.bed.gz.tbi | 318.82 KB | 58d26d9596a2bb8a0b9950abe3441f94 |
| ENCFF424JEX.tabix.bed.gz.tbi.dvc | 110.0 B | 84eaa631cbeb1bf627fefc7800bbae3b |
| genomic_resource.yaml | 4.45 KB | f264a800458fafbbdc26c1b99594de65 |
| genomic_resource_original.yaml | 4.36 KB | 8dc8ae769adad21adaa41ccbf32029f9 |
| statistics/ |