Resource

Id ATAC-seq/ENCSR684KUGcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR684KUG [biosample_summary="Homo sapiens GM18870"]
Description
Labels
  • accession: ENCSR684KUG
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0026249/
  • biosample_summary: Homo sapiens GM18870
  • date_created: 2020-11-24T22:02:45.352729+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR684KUG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR684KUG float

ATAC-seq_ENCSR684KUG
ATAC-seq ENCSR684KUG [biosample_summary="Homo sapiens GM18870"]
 HISTOGRAM FOR ATAC-seq_ENCSR684KUG [1.52, 29.8]
n
55,135,147
mean
6.33
sd
3.35

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 551351471.71% 109284
chr1 4746175 1.91% 9264
chr2 4952418 2.04% 10077
chr3 4103302 2.07% 8331
chr4 3796927 2.00% 7769
chr5 3585362 1.97% 7239
chr6 3881214 2.27% 7753
chr7 3116846 1.96% 6245
chr8 2900981 2.00% 5865
chr9 2169204 1.57% 4296
chr10 2604965 1.95% 5218
chr11 2523740 1.87% 4980
chr12 2690346 2.02% 5216
chr13 1631139 1.43% 3317
chr14 1624361 1.52% 3141
chr15 1440945 1.41% 2811
chr16 1318100 1.46% 2376
chr17 1515134 1.82% 2741
chr18 1314086 1.63% 2740
chr19 1165400 1.99% 1867
chr20 1000496 1.55% 1981
chr21 505425 1.08% 965
chr22 527130 1.04% 949
chrX 2020699 1.29% 4140
chrY 752 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 109284 150 2707 504.51 433
global segment-length histogram

Files

Filename Size md5
ENCFF937JGB.bed.gz 3.85 MB eb2e91d90ecfc6eff6677718fb550ead
ENCFF937JGB.tabix.bed.gz 1.17 MB d1824df3930868b323afdbc20b7e948e
ENCFF937JGB.tabix.bed.gz.tbi 485.48 KB 3217002b4acce29b39b61c5c84a688e4
genomic_resource.yaml 1.82 KB 5b25cbf916fcff55898d95446f1aa6db
statistics/