ATAC-seq_ENCSR673ZMQ
ATAC-seq ENCSR673ZMQ [biosample_summary="Homo sapiens HG03025"]
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| Id: | ATAC-seq/ENCSR673ZMQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR673ZMQ [biosample_summary="Homo sapiens HG03025"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN812ZXZ|/analyses/ENCAN812ZXZ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN812ZXZ|/analyses/ENCAN812ZXZ/} has in progress subobject document {afafb2e9-319b-4962-a498-10d19619de67|/documents/afafb2e9-319b-4962-a498-10d19619de67/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF535JYQ|/files/ENCFF535JYQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.18. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF715RQC|/files/ENCFF715RQC/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.841704. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF715RQC|/files/ENCFF715RQC/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR673ZMQ | float |
ATAC-seq_ENCSR673ZMQ |
ATAC-seq ENCSR673ZMQ [biosample_summary="Homo sapiens HG03025"]
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[1.32, 27.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF535JYQ.bed.gz | 3.08 MB | 6f7f7acd528a877051836ab887122abd |
| ENCFF535JYQ.bed.gz.dvc | 101.0 B | 684d0141c9c5ccceaecb083e90bca1b7 |
| ENCFF535JYQ.tabix.bed.gz | 928.33 KB | e5a77e59c8014140589c5b2794770b77 |
| ENCFF535JYQ.tabix.bed.gz.dvc | 106.0 B | 097c068180638a70aca2fa494d2bbd5a |
| ENCFF535JYQ.tabix.bed.gz.tbi | 423.49 KB | 053d8db9451cf45d629caf7923a2aa77 |
| ENCFF535JYQ.tabix.bed.gz.tbi.dvc | 110.0 B | 8f7f0c197e309db7db25fab25c4e70da |
| genomic_resource.yaml | 3.13 KB | 8f353cf58b861e6074a1550a455d738d |
| genomic_resource_original.yaml | 3.06 KB | 93283976f341fa7832feb18f6b26a97f |
| statistics/ |