Resource

Id ATAC-seq/ENCSR668VCTcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR668VCT [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR668VCT
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue male adult (37 years)
  • date_created: 2016-04-26T19:08:30.968710+00:00
  • date_released: 2016-06-15
  • doi: 10.17989/ENCSR668VCT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR668VCT float

ATAC-seq_ENCSR668VCT
ATAC-seq ENCSR668VCT [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR668VCT [1.5, 29.6]
n
43,931,804
mean
5.18
sd
2.23

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 439318041.37% 72729
chr1 4408987 1.77% 7140
chr2 3563697 1.47% 6090
chr3 2703885 1.36% 4582
chr4 1980765 1.04% 3440
chr5 2181431 1.20% 3727
chr6 2559904 1.50% 4267
chr7 2271315 1.43% 3810
chr8 1811015 1.25% 3140
chr9 1962644 1.42% 3265
chr10 2085956 1.56% 3566
chr11 2348271 1.74% 3828
chr12 2118110 1.59% 3445
chr13 962822 0.84% 1647
chr14 1421467 1.33% 2326
chr15 1422284 1.39% 2363
chr16 1646937 1.82% 2651
chr17 2207985 2.65% 3416
chr18 836235 1.04% 1490
chr19 1869269 3.19% 2742
chr20 1130595 1.75% 1892
chr21 569850 1.22% 954
chr22 910711 1.79% 1452
chrX 893735 0.57% 1369
chrY 63934 0.11% 127
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72729 150 3122 604.05 497
global segment-length histogram

Files

Filename Size md5
ENCFF762OIV.bed.gz 3.14 MB 1d71438f306ca8f5dd08c67e7d37be97
ENCFF762OIV.tabix.bed.gz 833.89 KB 01dbab484fec9b6d69a804386594dd5f
ENCFF762OIV.tabix.bed.gz.tbi 348.26 KB 541efe64fc2088cb3f73e75c6da85b0b
genomic_resource.yaml 1.63 KB c3d2956febe4c871408ee5bd1116282d
statistics/