ATAC-seq_ENCSR659SFK
ATAC-seq ENCSR659SFK [biosample_summary="Homo sapiens activated B cell male adult\ \ (22 years) treated with 0.5 \u03BCM CpG ODN for 24 hours"]
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| Id: | ATAC-seq/ENCSR659SFK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR659SFK [biosample_summary="Homo sapiens activated B cell male adult\ \ (22 years) treated with 0.5 \u03BCM CpG ODN for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (22 years) treated with 0.5 μM CpG ODN for 24 hours output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN661DOR|/analyses/ENCAN661DOR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF547RWX|/files/ENCFF547RWX/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has 22451903 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF547RWX|/files/ENCFF547RWX/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.728279. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF547RWX|/files/ENCFF547RWX/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.74. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR659SFK | float |
ATAC-seq_ENCSR659SFK |
ATAC-seq ENCSR659SFK [biosample_summary="Homo sapiens activated B cell male adult\ \ (22 years) treated with 0.5 \u03BCM CpG ODN for 24 hours"]
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[1.35, 43.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF958SXF.bed.gz | 2.83 MB | 7173735ce4504aa497dcd8d015457601 |
| ENCFF958SXF.bed.gz.dvc | 101.0 B | 7357def63cab22da043fd17e64f8d990 |
| ENCFF958SXF.tabix.bed.gz | 819.03 KB | 414e3ce73dbd07ab8831179de8a4cdad |
| ENCFF958SXF.tabix.bed.gz.dvc | 106.0 B | b3c8e84928d47f71f07375e401e421a5 |
| ENCFF958SXF.tabix.bed.gz.tbi | 315.79 KB | e1211f01b67af4917f77e61a63ffbbf0 |
| ENCFF958SXF.tabix.bed.gz.tbi.dvc | 110.0 B | 9a6e698dc59ec80dcd9c4aedaa222c6c |
| genomic_resource.yaml | 3.25 KB | 6a036194d6ee93b00917f2546e90e8ae |
| genomic_resource_original.yaml | 3.11 KB | e997f8bdd55534adacef4896f2e56e23 |
| statistics/ |