Resource

Id ATAC-seq/ENCSR648JJTcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR648JJT [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes"]
Description
Labels
  • accession: ENCSR648JJT
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes
  • date_created: 2016-10-11T20:26:57.388417+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR648JJT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 30 minutes
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR648JJT float

ATAC-seq_ENCSR648JJT
ATAC-seq ENCSR648JJT [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes"]
 HISTOGRAM FOR ATAC-seq_ENCSR648JJT [1.42, 43.5]
n
69,841,241
mean
8.33
sd
4.72

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 698412412.17% 152501
chr1 6471822 2.60% 14148
chr2 5828567 2.41% 12867
chr3 4713396 2.38% 10438
chr4 3407278 1.79% 7510
chr5 3848322 2.12% 8530
chr6 4283673 2.51% 9319
chr7 3701809 2.32% 8002
chr8 3348997 2.31% 7395
chr9 2960453 2.14% 6527
chr10 3441771 2.57% 7631
chr11 3413608 2.53% 7393
chr12 3519605 2.64% 7723
chr13 1736415 1.52% 3808
chr14 2197239 2.05% 4756
chr15 2209762 2.17% 4871
chr16 2246685 2.49% 4724
chr17 2908577 3.49% 6170
chr18 1559806 1.94% 3448
chr19 2282768 3.89% 4532
chr20 1832441 2.84% 4068
chr21 850568 1.82% 1845
chr22 1114651 2.19% 2364
chrX 1873232 1.20% 4214
chrY 89796 0.16% 218
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 152501 150 2687 457.97 385
global segment-length histogram

Files

Filename Size md5
ENCFF544EIO.bed.gz 5.26 MB 8194839ca0211594d30204a6d755744d
ENCFF544EIO.tabix.bed.gz 1.65 MB 2ce36c976d534242eef840eec66dd825
ENCFF544EIO.tabix.bed.gz.tbi 512.88 KB a3960afb478809cf1c646f0e249d7c89
genomic_resource.yaml 1.59 KB 3f66b2da74d28ac3ff7b6d162822d3e3
statistics/