ATAC-seq_ENCSR647AOY
ATAC-seq ENCSR647AOY [biosample_summary="Homo sapiens lung tissue female adult (47 years)"]
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| Id: | ATAC-seq/ENCSR647AOY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR647AOY [biosample_summary="Homo sapiens lung tissue female adult (47 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN079QLM|/analyses/ENCAN079QLM/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN079QLM|/analyses/ENCAN079QLM/} has in progress subobject document {50503732-021d-48d5-992a-6017f3c3ef03|/documents/50503732-021d-48d5-992a-6017f3c3ef03/} audit_not_compliant: Alignment file {ENCFF810ZGD|/files/ENCFF810ZGD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 18425763 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF818EYD|/files/ENCFF818EYD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.18. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF818EYD|/files/ENCFF818EYD/} (overlap peaks) and {ENCFF068ZZZ|/files/ENCFF068ZZZ/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 107260 and 48163 peaks. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR647AOY | float |
ATAC-seq_ENCSR647AOY |
ATAC-seq ENCSR647AOY [biosample_summary="Homo sapiens lung tissue female adult (47 years)"]
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[1.6, 31.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF818EYD.bed.gz | 2.56 MB | 7de2eebc81542ddc47b11c6feaaa724b |
| ENCFF818EYD.bed.gz.dvc | 101.0 B | 7ca0f5437c0f7250933cd9f51cab7bd6 |
| ENCFF818EYD.tabix.bed.gz | 811.48 KB | 9691431875a0e84c0d37e3b33ae8d272 |
| ENCFF818EYD.tabix.bed.gz.dvc | 106.0 B | 1ec23e1e6d2dc1bfbdf75e0d659878fb |
| ENCFF818EYD.tabix.bed.gz.tbi | 371.87 KB | 6adfe757629cf0b51e51d5483d0d1dba |
| ENCFF818EYD.tabix.bed.gz.tbi.dvc | 110.0 B | 9c39386f1c824365ef01da31991a7c79 |
| genomic_resource.yaml | 2.93 KB | efb2f8bf4c362251c46d6a7ee77c3d51 |
| genomic_resource_original.yaml | 2.84 KB | 752eb6a9ab350964035521af5f3f4def |
| statistics/ |