ATAC-seq_ENCSR641KNU
ATAC-seq ENCSR641KNU [biosample_summary="Homo sapiens GM21825"]
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| Id: | ATAC-seq/ENCSR641KNU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR641KNU [biosample_summary="Homo sapiens GM21825"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN895KSJ|/analyses/ENCAN895KSJ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF512LHW|/files/ENCFF512LHW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.891091. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF512LHW|/files/ENCFF512LHW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR641KNU | float |
ATAC-seq_ENCSR641KNU |
ATAC-seq ENCSR641KNU [biosample_summary="Homo sapiens GM21825"]
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[1.45, 41.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF312JVA.bed.gz | 3.67 MB | 37dcd848363536da57f2fb75004b1338 |
| ENCFF312JVA.bed.gz.dvc | 101.0 B | 253c03839180f86a78150dfbf6afef46 |
| ENCFF312JVA.tabix.bed.gz | 1.07 MB | adfcc59aa7a4efc345a6202bd6305daf |
| ENCFF312JVA.tabix.bed.gz.dvc | 107.0 B | f12476f5930a9256e0cd9ffde14b494d |
| ENCFF312JVA.tabix.bed.gz.tbi | 429.81 KB | 7f0626e876dbfef38aeba0a88e42d703 |
| ENCFF312JVA.tabix.bed.gz.tbi.dvc | 110.0 B | 9acc2039c7c62ee348c45e472b63c67d |
| genomic_resource.yaml | 2.49 KB | 136e6e5258e1646e6f5cb8e00e775776 |
| genomic_resource_original.yaml | 2.42 KB | 27f28421ab3f25257f5f0eb2a0fa268d |
| statistics/ |