Resource

Id ATAC-seq/ENCSR637XSCcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR637XSC [biosample_summary="Homo sapiens GM12878"]
Description
Labels
  • accession: ENCSR637XSC
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2019-07-31T03:16:09.235704+00:00
  • date_released: 2020-08-05
  • doi: 10.17989/ENCSR637XSC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR637XSC float

ATAC-seq_ENCSR637XSC
ATAC-seq ENCSR637XSC [biosample_summary="Homo sapiens GM12878"]
 HISTOGRAM FOR ATAC-seq_ENCSR637XSC [1.26, 40.4]
n
104,425,534
mean
5.8
sd
2.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1044255343.25% 154082
chr1 9804483 3.94% 14256
chr2 8585494 3.54% 12856
chr3 7151956 3.61% 10942
chr4 5383562 2.83% 8432
chr5 5959733 3.28% 9014
chr6 6680525 3.91% 9988
chr7 5606827 3.52% 8346
chr8 4561279 3.14% 6902
chr9 4220747 3.05% 6302
chr10 4950147 3.70% 7345
chr11 5055688 3.74% 7254
chr12 5214565 3.91% 7638
chr13 2882689 2.52% 4428
chr14 3425715 3.20% 4980
chr15 3267754 3.20% 4798
chr16 3358381 3.72% 4634
chr17 4141600 4.97% 5605
chr18 2328058 2.90% 3634
chr19 3151966 5.38% 4144
chr20 2556636 3.97% 3756
chr21 1083409 2.32% 1526
chr22 1849706 3.64% 2478
chrX 3204082 2.05% 4822
chrY 532 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 154082 150 3798 677.73 554
global segment-length histogram

Files

Filename Size md5
ENCFF168UYI.bed.gz 6.83 MB 9f22166873074ed539bcc740ef27c52a
ENCFF168UYI.tabix.bed.gz 1.71 MB ea0b17cdd99f68cf525c43011911d15c
ENCFF168UYI.tabix.bed.gz.tbi 496.78 KB 19a8a820f1acd57e022f1b86314bcc7a
genomic_resource.yaml 1.51 KB 0c445c5e7e7e819cab2f7909d14a6af8
statistics/