| Id: | ATAC-seq/ENCSR637OPZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR637OPZ [biosample_summary="Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-15 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (36 years) treated with 100 ng/mL Interleukin-15 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN478FMJ|/analyses/ENCAN478FMJ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF218IMC|/files/ENCFF218IMC/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.852658. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF218IMC|/files/ENCFF218IMC/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF960TBS|/files/ENCFF960TBS/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.84677. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF960TBS|/files/ENCFF960TBS/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.85. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR637OPZ | float |
ATAC-seq_ENCSR637OPZ |
ATAC-seq ENCSR637OPZ [biosample_summary="Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-15 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"]
|
 |
[1.27, 42.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF955PTL.bed.gz | 4.98 MB | f3e0e5fcf4359cb0ca0131c00090b1a9 |
| ENCFF955PTL.bed.gz.dvc | 101.0 B | ad72072aa50d3c9fe9258c6141724dce |
| ENCFF955PTL.tabix.bed.gz | 1.29 MB | 831ee074183c12821df6dc59291b14eb |
| ENCFF955PTL.tabix.bed.gz.dvc | 107.0 B | 5d926c8abd3cdb1b5eee0543bd7e6e43 |
| ENCFF955PTL.tabix.bed.gz.tbi | 439.01 KB | 7599fa82475e4972a608cb59ae350080 |
| ENCFF955PTL.tabix.bed.gz.tbi.dvc | 110.0 B | 2da5d69f1cc200b0263676082e404f1a |
| genomic_resource.yaml | 4.36 KB | e76a8196a1d6b94c07dd166c5e617481 |
| genomic_resource_original.yaml | 4.13 KB | e8e529add92395724d18d173cd87162b |
| statistics/ |