ATAC-seq_ENCSR635CAC
ATAC-seq ENCSR635CAC [biosample_summary="Homo sapiens GM19467"]
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| Id: | ATAC-seq/ENCSR635CAC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR635CAC [biosample_summary="Homo sapiens GM19467"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN785VFD|/analyses/ENCAN785VFD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF152BRZ|/files/ENCFF152BRZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.83779. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF152BRZ|/files/ENCFF152BRZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR635CAC | float |
ATAC-seq_ENCSR635CAC |
ATAC-seq ENCSR635CAC [biosample_summary="Homo sapiens GM19467"]
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[1.55, 39.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF837IEL.bed.gz | 3.39 MB | 58bb4d758149716ef65b1193f693663f |
| ENCFF837IEL.bed.gz.dvc | 101.0 B | f8b3c228f31779d27cac2217896409bf |
| ENCFF837IEL.tabix.bed.gz | 1005.85 KB | 1c3c2c12d3eff8c9d2f457a13d277e41 |
| ENCFF837IEL.tabix.bed.gz.dvc | 107.0 B | 94e423e77f315c85b1ba391e9ce614ae |
| ENCFF837IEL.tabix.bed.gz.tbi | 418.18 KB | 92bb4e8ec5528b515c03102b5377f5d6 |
| ENCFF837IEL.tabix.bed.gz.tbi.dvc | 110.0 B | 9bbc61b574b9a528e069b9b0334a3475 |
| genomic_resource.yaml | 2.48 KB | 4c281fefffe5426a77ee4e9f61af2ebf |
| genomic_resource_original.yaml | 2.42 KB | 4b050df7a64804be83273314b57922a4 |
| statistics/ |