ATAC-seq_ENCSR634WYX
ATAC-seq ENCSR634WYX [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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| Id: | ATAC-seq/ENCSR634WYX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR634WYX [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (47 years) with amyotrophic lateral sclerosis output_type: replicated peaks audit_internal_action: Released analysis {ENCAN618LZA|/analyses/ENCAN618LZA/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF786BZU|/files/ENCFF786BZU/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.749118. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF786BZU|/files/ENCFF786BZU/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.77. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF079ETH|/files/ENCFF079ETH/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.745163. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF079ETH|/files/ENCFF079ETH/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.76. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR634WYX | float |
ATAC-seq_ENCSR634WYX |
ATAC-seq ENCSR634WYX [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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[1.12, 43] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF305GXR.bed.gz | 5.48 MB | bc4cbbac41b062cd22766e30fbbbfe48 |
| ENCFF305GXR.bed.gz.dvc | 101.0 B | 25855cbd49db00f0defdc1d3366baca0 |
| ENCFF305GXR.tabix.bed.gz | 1.5 MB | 0b3abc4a67ffbc14f0b287236a0f0f46 |
| ENCFF305GXR.tabix.bed.gz.dvc | 107.0 B | 027a42771d11e89b3373362a92efadc8 |
| ENCFF305GXR.tabix.bed.gz.tbi | 518.5 KB | 04f06d6f30828de69a69e34b4ffe8616 |
| ENCFF305GXR.tabix.bed.gz.tbi.dvc | 110.0 B | 2133dad807deac7eddf590ff8890a214 |
| genomic_resource.yaml | 3.87 KB | 41bc84b664ec9c04ffe57c46860fc930 |
| genomic_resource_original.yaml | 3.75 KB | da19f707e6cf9263ad9eaa87356f1dad |
| statistics/ |