ATAC-seq_ENCSR630REB
ATAC-seq ENCSR630REB [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)"]
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| Id: | ATAC-seq/ENCSR630REB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR630REB [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN196VYA|/analyses/ENCAN196VYA/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN196VYA|/analyses/ENCAN196VYA/} has in progress subobject document {5f48a3b9-dee5-469f-b5e8-8d8a27326b52|/documents/5f48a3b9-dee5-469f-b5e8-8d8a27326b52/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF135ENI|/files/ENCFF135ENI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.86587. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF135ENI|/files/ENCFF135ENI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR630REB | float |
ATAC-seq_ENCSR630REB |
ATAC-seq ENCSR630REB [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)"]
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[1.31, 35.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF664YGN.bed.gz | 4.14 MB | 607bea3281b8a3466e7e6ffafd69381e |
| ENCFF664YGN.bed.gz.dvc | 101.0 B | 427ef45b4f97b9d8cf74c75bfcc3bdd5 |
| ENCFF664YGN.tabix.bed.gz | 1.06 MB | 0a7a9f7d7eea86206bf1c3d1f126ec0b |
| ENCFF664YGN.tabix.bed.gz.dvc | 107.0 B | 060c527539747334234a26abee791ae9 |
| ENCFF664YGN.tabix.bed.gz.tbi | 403.52 KB | 682969d303d34d4a92e868064ed7e89c |
| ENCFF664YGN.tabix.bed.gz.tbi.dvc | 110.0 B | 7c3678cbce28df2551085d0d63b460dd |
| genomic_resource.yaml | 2.78 KB | 0beb308cbb67f1e2a822ca506ab4535b |
| genomic_resource_original.yaml | 2.68 KB | 301d667003057e1b1d5bad225b37b0b5 |
| statistics/ |