Resource

Id ATAC-seq/ENCSR628SXXcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR628SXX [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours"]
Description
Labels
  • accession: ENCSR628SXX
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours
  • date_created: 2016-10-11T22:36:11.684322+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR628SXX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 2 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR628SXX float

ATAC-seq_ENCSR628SXX
ATAC-seq ENCSR628SXX [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR628SXX [1.43, 32.1]
n
39,179,897
mean
6.45
sd
3.06

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 391798971.22% 97935
chr1 3643547 1.46% 8996
chr2 3202298 1.32% 8174
chr3 2521486 1.27% 6397
chr4 1796736 0.94% 4584
chr5 2095377 1.15% 5359
chr6 2392060 1.40% 6052
chr7 2089968 1.31% 5259
chr8 1879645 1.30% 4791
chr9 1642475 1.19% 4136
chr10 1894822 1.42% 4849
chr11 1961105 1.45% 4902
chr12 1937409 1.45% 4860
chr13 890263 0.78% 2272
chr14 1228432 1.15% 3014
chr15 1247740 1.22% 3139
chr16 1357102 1.50% 3197
chr17 1720679 2.07% 4100
chr18 865148 1.08% 2216
chr19 1467894 2.50% 3217
chr20 1041171 1.62% 2639
chr21 486833 1.04% 1186
chr22 683539 1.35% 1643
chrX 1133072 0.73% 2948
chrY 1096 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 97935 150 3197 400.06 333
global segment-length histogram

Files

Filename Size md5
ENCFF614GDX.bed.gz 3.01 MB 8ac8f1cd960dda2ad728baba24e47de4
ENCFF614GDX.tabix.bed.gz 1.04 MB b19d19bf87bf6a15a96fcac8bdfbd81f
ENCFF614GDX.tabix.bed.gz.tbi 429.67 KB f2101e85c4540b43b2bf932b1ad9740f
genomic_resource.yaml 1.58 KB 8011ed74bcc360daddecfdb6230d8016
statistics/