Resource

Id ATAC-seq/ENCSR628PLScontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR628PLS [biosample_summary="Homo sapiens GM18861"]
Description
Labels
  • accession: ENCSR628PLS
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0026256/
  • biosample_summary: Homo sapiens GM18861
  • date_created: 2020-11-24T22:02:44.957955+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR628PLS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR628PLS float

ATAC-seq_ENCSR628PLS
ATAC-seq ENCSR628PLS [biosample_summary="Homo sapiens GM18861"]
 HISTOGRAM FOR ATAC-seq_ENCSR628PLS [1.52, 40.9]
n
52,997,509
mean
7.22
sd
3.88

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 529975091.65% 108289
chr1 4702359 1.89% 9528
chr2 4616449 1.91% 9673
chr3 3814893 1.92% 7997
chr4 3211329 1.69% 6876
chr5 3218669 1.77% 6807
chr6 3655826 2.14% 7574
chr7 2971171 1.86% 6181
chr8 2667258 1.84% 5582
chr9 2089456 1.51% 4229
chr10 2534211 1.89% 5183
chr11 2465268 1.82% 5036
chr12 2642352 1.98% 5354
chr13 1472733 1.29% 3076
chr14 1604247 1.50% 3166
chr15 1487667 1.46% 2928
chr16 1433373 1.59% 2661
chr17 1763660 2.12% 3302
chr18 1195773 1.49% 2499
chr19 1363213 2.33% 2338
chr20 1079542 1.68% 2175
chr21 478222 1.02% 919
chr22 646597 1.27% 1174
chrX 1882394 1.21% 4028
chrY 847 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 108289 150 2399 489.41 417
global segment-length histogram

Files

Filename Size md5
ENCFF439KAX.bed.gz 3.76 MB ae2ddca24d76abefecc12d2f2bb1e17d
ENCFF439KAX.tabix.bed.gz 1.18 MB f2c1e8a6caa2e0acdc4fa554f6d10e93
ENCFF439KAX.tabix.bed.gz.tbi 463.96 KB 7a976153e61746216486a9cbfa2d18d7
genomic_resource.yaml 1.28 KB 849e8b054546d63769c396411822ea35
statistics/