Resource

Id ATAC-seq/ENCSR624ODLcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR624ODL [biosample_summary="Homo sapiens left lobe of liver tissue female adult (61 years)"]
Description
Labels
  • accession: ENCSR624ODL
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001115/
  • biosample_summary: Homo sapiens left lobe of liver tissue female adult (61 years)
  • date_created: 2019-06-02T13:42:52.819388+00:00
  • date_released: 2020-08-17
  • doi: 10.17989/ENCSR624ODL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (61 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR624ODL float

ATAC-seq_ENCSR624ODL
ATAC-seq ENCSR624ODL [biosample_summary="Homo sapiens left lobe of liver tissue female adult (61 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR624ODL [1.22, 41]
n
103,459,358
mean
6.29
sd
3.56

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1034593583.22% 153628
chr1 9840113 3.95% 14442
chr2 8177774 3.38% 12320
chr3 6649291 3.35% 10108
chr4 4607895 2.42% 7087
chr5 5226664 2.88% 8063
chr6 5811595 3.40% 8721
chr7 5433914 3.41% 8077
chr8 4433716 3.05% 6735
chr9 4521151 3.27% 6658
chr10 5289387 3.95% 7829
chr11 5324096 3.94% 7791
chr12 5121286 3.84% 7621
chr13 2561823 2.24% 3833
chr14 3322401 3.10% 4851
chr15 3441207 3.37% 5079
chr16 3813956 4.22% 5448
chr17 4685016 5.63% 6569
chr18 2322645 2.89% 3502
chr19 3596818 6.14% 4996
chr20 2751448 4.27% 4096
chr21 1344257 2.88% 1888
chr22 2323932 4.57% 3285
chrX 2604978 1.67% 4206
chrY 253995 0.44% 423
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 153628 150 4322 673.44 569
global segment-length histogram

Files

Filename Size md5
ENCFF485JDL.bed.gz 6.73 MB 607969f8e9b57a647e15391f3f865d3d
ENCFF485JDL.tabix.bed.gz 1.71 MB c0b3f63a633f2ee9795bb01e86ee9912
ENCFF485JDL.tabix.bed.gz.tbi 493.72 KB c87d57fad78caa76b7052648f80f83f7
genomic_resource.yaml 1.65 KB 753bef42db9433de3e5fe96387fc06a0
statistics/