Resource
| Id | ATAC-seq/ENCSR624CTU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR624CTU [biosample_summary="Homo sapiens HG03520"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN386ELP|/analyses/ENCAN386ELP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF614WUU|/files/ENCFF614WUU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.751815. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF614WUU|/files/ENCFF614WUU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR624CTU | float |
ATAC-seq_ENCSR624CTU |
ATAC-seq ENCSR624CTU [biosample_summary="Homo sapiens HG03520"]
|
 |
[1.55, 41.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49056086 | 1.52% | 102291 |
| chr1 | 4330986 | 1.74% | 8802 |
| chr2 | 4439066 | 1.83% | 9549 |
| chr3 | 3545733 | 1.79% | 7598 |
| chr4 | 3000839 | 1.58% | 6577 |
| chr5 | 3107232 | 1.71% | 6638 |
| chr6 | 3399413 | 1.99% | 7167 |
| chr7 | 2833058 | 1.78% | 6010 |
| chr8 | 2512471 | 1.73% | 5448 |
| chr9 | 1908401 | 1.38% | 3953 |
| chr10 | 2317779 | 1.73% | 4869 |
| chr11 | 2394484 | 1.77% | 4967 |
| chr12 | 2432703 | 1.83% | 4980 |
| chr13 | 1368185 | 1.20% | 2978 |
| chr14 | 1413717 | 1.32% | 2856 |
| chr15 | 1218564 | 1.19% | 2454 |
| chr16 | 1270547 | 1.41% | 2394 |
| chr17 | 1489202 | 1.79% | 2804 |
| chr18 | 1144547 | 1.42% | 2500 |
| chr19 | 1202368 | 2.05% | 2045 |
| chr20 | 981528 | 1.52% | 2062 |
| chr21 | 427451 | 0.92% | 829 |
| chr22 | 542550 | 1.07% | 985 |
| chrX | 1774660 | 1.14% | 3824 |
| chrY | 602 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 102291 | 150 | 2738 | 479.57 | 387 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF797OZK.bed.gz | 3.53 MB | 4d5467fb02f7423b4b4ba83b6b4d559c |
| ENCFF797OZK.tabix.bed.gz | 1.09 MB | 09a538e5f84dda6af195d458d0cd1b9d |
| ENCFF797OZK.tabix.bed.gz.tbi | 466.36 KB | c50d9529236a0d4824efe77970ee9877 |
| genomic_resource.yaml | 2.49 KB | 54ef818d5a25c6e52f569ec1ccaeb5d3 |
| statistics/ |