ATAC-seq_ENCSR624CTU
ATAC-seq ENCSR624CTU [biosample_summary="Homo sapiens HG03520"]
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| Id: | ATAC-seq/ENCSR624CTU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR624CTU [biosample_summary="Homo sapiens HG03520"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN386ELP|/analyses/ENCAN386ELP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF614WUU|/files/ENCFF614WUU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.751815. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF614WUU|/files/ENCFF614WUU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR624CTU | float |
ATAC-seq_ENCSR624CTU |
ATAC-seq ENCSR624CTU [biosample_summary="Homo sapiens HG03520"]
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[1.55, 41.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF797OZK.bed.gz | 3.53 MB | 4d5467fb02f7423b4b4ba83b6b4d559c |
| ENCFF797OZK.bed.gz.dvc | 101.0 B | 39aa036d81980e8d40fca7c3e1cb7b7e |
| ENCFF797OZK.tabix.bed.gz | 1.09 MB | 09a538e5f84dda6af195d458d0cd1b9d |
| ENCFF797OZK.tabix.bed.gz.dvc | 107.0 B | d317f0a6df3439f126ed83bb7d8f0b73 |
| ENCFF797OZK.tabix.bed.gz.tbi | 466.36 KB | c50d9529236a0d4824efe77970ee9877 |
| ENCFF797OZK.tabix.bed.gz.tbi.dvc | 110.0 B | fcb548c3bd1ab2495faab95e3cbc8d50 |
| genomic_resource.yaml | 2.49 KB | 54ef818d5a25c6e52f569ec1ccaeb5d3 |
| genomic_resource_original.yaml | 2.42 KB | 65079c6cdd8394ddc49feefadbe37df9 |
| statistics/ |