ATAC-seq_ENCSR621JYI
ATAC-seq ENCSR621JYI [biosample_summary="Homo sapiens HG02885"]
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| Id: | ATAC-seq/ENCSR621JYI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR621JYI [biosample_summary="Homo sapiens HG02885"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN910RHO|/analyses/ENCAN910RHO/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF056MAS|/files/ENCFF056MAS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.579095. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF056MAS|/files/ENCFF056MAS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR621JYI | float |
ATAC-seq_ENCSR621JYI |
ATAC-seq ENCSR621JYI [biosample_summary="Homo sapiens HG02885"]
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[1.36, 45.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF061BAD.bed.gz | 4.64 MB | 9b4492e441b5970c9a2277770c1cc535 |
| ENCFF061BAD.bed.gz.dvc | 101.0 B | e0de6027ce1d245220add3d0d45447b2 |
| ENCFF061BAD.tabix.bed.gz | 1.33 MB | b7aa9885dfae69ad8126d2f33e960716 |
| ENCFF061BAD.tabix.bed.gz.dvc | 107.0 B | dcd23da06d8ab0484af2c390e7cd49c3 |
| ENCFF061BAD.tabix.bed.gz.tbi | 504.3 KB | 27bd968442bdfe4d1aeb29d41b483ec4 |
| ENCFF061BAD.tabix.bed.gz.tbi.dvc | 110.0 B | 7b0390d04ba5079baeaef88e4edf0e7a |
| genomic_resource.yaml | 2.49 KB | fbc5129bbbc35eb0d1e99af75d26293d |
| genomic_resource_original.yaml | 2.42 KB | 4de8d99db6a33bd4e76b463095aeb00b |
| statistics/ |