ATAC-seq_ENCSR619LHF
ATAC-seq ENCSR619LHF [biosample_summary="Homo sapiens sciatic nerve tissue female adult (47 years)"]
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| Id: | ATAC-seq/ENCSR619LHF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR619LHF [biosample_summary="Homo sapiens sciatic nerve tissue female adult (47 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN739PTL|/analyses/ENCAN739PTL/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF779SAR|/files/ENCFF779SAR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.13. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF584LRY|/files/ENCFF584LRY/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.888515. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF584LRY|/files/ENCFF584LRY/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR619LHF | float |
ATAC-seq_ENCSR619LHF |
ATAC-seq ENCSR619LHF [biosample_summary="Homo sapiens sciatic nerve tissue female adult (47 years)"]
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[1.37, 30.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF779SAR.bed.gz | 4.42 MB | 98aa13a48099933e662962eaba67022d |
| ENCFF779SAR.bed.gz.dvc | 101.0 B | 132afe72b0bc5624de573f9afa48bf59 |
| ENCFF779SAR.tabix.bed.gz | 1.27 MB | f39de2efaee12fe20fb4b437846d71d8 |
| ENCFF779SAR.tabix.bed.gz.dvc | 107.0 B | a221c3a8a8fdf4a0ca8e7176c1a24f08 |
| ENCFF779SAR.tabix.bed.gz.tbi | 476.01 KB | 05b4f9195a94254bf2ba487198124277 |
| ENCFF779SAR.tabix.bed.gz.tbi.dvc | 110.0 B | 5361c4684fcee233488265715a266f58 |
| genomic_resource.yaml | 3.34 KB | 847c14b4ca8923746f8b68ede09f48b0 |
| genomic_resource_original.yaml | 3.24 KB | 9b18f3bb3ae99c56f85b2a51bcdaeb50 |
| statistics/ |