ATAC-seq_ENCSR614JAG
ATAC-seq ENCSR614JAG [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (36 years)"]
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| Id: | ATAC-seq/ENCSR614JAG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR614JAG [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (36 years)"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (36 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN823VRQ|/analyses/ENCAN823VRQ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF281QTY|/files/ENCFF281QTY/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.762539. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF281QTY|/files/ENCFF281QTY/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.78. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF887IOM|/files/ENCFF887IOM/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.709768. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF887IOM|/files/ENCFF887IOM/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR614JAG | float |
ATAC-seq_ENCSR614JAG |
ATAC-seq ENCSR614JAG [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (36 years)"]
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[1.23, 47.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF555UEL.bed.gz | 2.93 MB | 1510e2e79f158eb1c4b41850a559d458 |
| ENCFF555UEL.bed.gz.dvc | 101.0 B | cb32810a8ba19516d168b11963f1368a |
| ENCFF555UEL.tabix.bed.gz | 789.53 KB | 6fbb4c33f09dad54bb22e9e397482eee |
| ENCFF555UEL.tabix.bed.gz.dvc | 106.0 B | 31ad379229486482a82d63bf1ce42588 |
| ENCFF555UEL.tabix.bed.gz.tbi | 307.14 KB | 731fcdb60f247ab825aa1ac8252ef0c7 |
| ENCFF555UEL.tabix.bed.gz.tbi.dvc | 110.0 B | 11a0f817c73ab288fd6db832ddf4d847 |
| genomic_resource.yaml | 3.83 KB | b5362df6509710295e34893874117663 |
| genomic_resource_original.yaml | 3.7 KB | ef5aded3398d95b81d7bad2c8d315c36 |
| statistics/ |