ATAC-seq_ENCSR611BQR
ATAC-seq ENCSR611BQR [biosample_summary="Homo sapiens T-helper 17 cell male adult (50 years)"]
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| Id: | ATAC-seq/ENCSR611BQR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR611BQR [biosample_summary="Homo sapiens T-helper 17 cell male adult (50 years)"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (50 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN119MPB|/analyses/ENCAN119MPB/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF402BPT|/files/ENCFF402BPT/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.733011. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF402BPT|/files/ENCFF402BPT/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.75. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF554VYS|/files/ENCFF554VYS/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.776984. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF554VYS|/files/ENCFF554VYS/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.80. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR611BQR | float |
ATAC-seq_ENCSR611BQR |
ATAC-seq ENCSR611BQR [biosample_summary="Homo sapiens T-helper 17 cell male adult (50 years)"]
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[1.24, 49.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF721ZMU.bed.gz | 3.06 MB | 43b8b31fd5041bee100d52e820d3cfaa |
| ENCFF721ZMU.bed.gz.dvc | 101.0 B | 2ece64bea5d56283fab48fb6193d3d16 |
| ENCFF721ZMU.tabix.bed.gz | 826.6 KB | 67226a801e6df984aabb5ac8267fd261 |
| ENCFF721ZMU.tabix.bed.gz.dvc | 106.0 B | 77a9b1484260689268686e23534d20c8 |
| ENCFF721ZMU.tabix.bed.gz.tbi | 317.3 KB | 051129d6a0bd16e6c710c836dd9a7a94 |
| ENCFF721ZMU.tabix.bed.gz.tbi.dvc | 110.0 B | 5bc98182294499d521708f9a9e2486f4 |
| genomic_resource.yaml | 3.72 KB | fa8817c2132f8338ae684ca79d338313 |
| genomic_resource_original.yaml | 3.63 KB | 0c17f4ed77665c9fa3d1df6f578a7da6 |
| statistics/ |